Strain Fitness in Pseudomonas putida KT2440 around PP_4434

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
5,030,538	-		PP_4433	0.87	+0.1
5,030,614	-				-0.4
5,030,614	-				+0.4
5,030,642	+				+0.2
5,030,670	-				-0.1
5,030,712	+				-1.2
5,030,718	-				-1.2
5,030,731	+				+1.4
5,030,732	-				+0.7
5,030,747	+				+1.1
5,030,747	+				+0.2
5,030,748	-				+1.5
5,030,810	-				+0.1
5,030,812	-				-1.1
5,030,812	-				+0.2
5,030,839	+				+0.9
5,030,840	-				+0.4
5,030,846	-				-0.1
5,030,971	-				-0.2
5,031,014	+				+0.2
5,031,147	+				-0.1
5,031,148	-				+0.5
5,031,217	-				-0.4
5,031,222	+				-1.0
5,031,257	+				-1.1
5,031,257	+				+1.2
5,031,258	-				-1.3
5,031,261	-				-0.1
5,031,295	-				-2.0
5,031,295	-				-0.1
5,031,360	-		PP_4434	0.12	-0.6
5,031,360	-		PP_4434	0.12	+0.9
5,031,404	-		PP_4434	0.15	-0.7
5,031,404	-		PP_4434	0.15	-0.1
5,031,433	-		PP_4434	0.17	-0.5
5,031,433	-		PP_4434	0.17	+0.7
5,031,465	-		PP_4434	0.20	+0.2
5,031,510	-		PP_4434	0.23	+0.4
5,031,510	-		PP_4434	0.23	-1.0
5,031,590	-		PP_4434	0.29	-0.4
5,031,592	-		PP_4434	0.29	-0.2
5,031,620	-		PP_4434	0.32	+0.5
5,031,670	-		PP_4434	0.35	-0.8
5,031,765	+		PP_4434	0.43	+0.4
5,031,765	+		PP_4434	0.43	-0.4
5,031,766	-		PP_4434	0.43	-0.5
5,031,766	-		PP_4434	0.43	-0.5
5,031,875	-		PP_4434	0.51	-0.1
5,031,942	+		PP_4434	0.56	+0.0
5,031,974	+		PP_4434	0.59	+0.7
5,031,986	-		PP_4434	0.60	-0.0
5,031,991	-		PP_4434	0.60	-0.7
5,032,015	+		PP_4434	0.62	+0.2
5,032,015	+		PP_4434	0.62	-0.6
5,032,016	-		PP_4434	0.62	-0.3
5,032,034	+		PP_4434	0.64	-1.0
5,032,035	-		PP_4434	0.64	+1.0
5,032,035	-		PP_4434	0.64	-0.7
5,032,067	-		PP_4434	0.66	+0.1
5,032,067	-		PP_4434	0.66	+0.3
5,032,100	+		PP_4434	0.69	-0.8
5,032,101	-		PP_4434	0.69	-0.8
5,032,158	+		PP_4434	0.73	-0.9
5,032,158	+		PP_4434	0.73	-0.8
5,032,158	+		PP_4434	0.73	+0.6
5,032,216	-		PP_4434	0.78	+0.4
5,032,255	+		PP_4434	0.81	+0.8
5,032,294	+		PP_4434	0.84	+0.2
5,032,305	+		PP_4434	0.84	+1.1
5,032,305	+		PP_4434	0.84	+0.8
5,032,305	+		PP_4434	0.84	+1.5
5,032,306	-		PP_4434	0.84	-1.1
5,032,309	+		PP_4434	0.85	-0.2
5,032,357	-		PP_4434	0.88	+1.6
5,032,357	-		PP_4434	0.88	-0.1
5,032,445	-				-0.3
5,032,445	-				-1.1
5,032,445	-				-0.1
5,032,445	-				-0.1
5,032,455	-				-0.1
5,032,506	-				+1.0
5,032,508	+				+0.6
5,032,509	-				+0.2
5,032,509	-				+0.3
5,032,529	+		PP_4435	0.13	+0.8
5,032,530	-		PP_4435	0.14	+3.0
5,032,676	+		PP_4435	0.55	+0.4
5,032,676	+		PP_4435	0.55	+1.2
5,032,676	+		PP_4435	0.55	+0.2
5,032,677	-		PP_4435	0.55	-0.8
5,032,677	-		PP_4435	0.55	+0.7
5,032,677	-		PP_4435	0.55	+0.5
5,032,680	+		PP_4435	0.56	-1.2
5,032,681	-		PP_4435	0.56	-0.4
5,032,782	-		PP_4435	0.85	-0.6
5,032,782	-		PP_4435	0.85	+0.4
5,032,840	+				-0.2
5,032,840	+				-0.9
5,032,840	+				-0.0
5,032,841	-				-0.8
5,032,864	-				-0.9
5,032,875	+				-0.2
5,032,876	-				-0.8
5,032,907	-				-0.1
5,032,952	+				-0.3
5,032,953	-				-0.7
5,032,979	+				+0.2
5,032,979	+				+0.5
5,033,147	-				-0.1
5,033,184	-				-0.8