Strain Fitness in Pseudomonas putida KT2440 around PP_3835

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
4,358,992	+		PP_3834	0.33	-1.1
4,359,021	+		PP_3834	0.35	-1.2
4,359,066	+		PP_3834	0.38	-0.7
4,359,215	+		PP_3834	0.49	+1.0
4,359,247	+		PP_3834	0.51	+0.6
4,359,248	-		PP_3834	0.51	-0.3
4,359,291	+		PP_3834	0.54	+0.2
4,359,292	-		PP_3834	0.54	+1.9
4,359,482	+		PP_3834	0.67	+0.1
4,359,482	+		PP_3834	0.67	-0.1
4,359,482	+		PP_3834	0.67	-0.2
4,359,482	+		PP_3834	0.67	-1.4
4,359,483	-		PP_3834	0.67	+0.7
4,359,560	+		PP_3834	0.73	+0.1
4,359,561	-				+1.2
4,359,662	+		PP_3834	0.80	-0.4
4,359,662	+		PP_3834	0.80	+0.2
4,359,739	-		PP_3834	0.85	+0.0
4,359,870	+				+0.2
4,359,870	+				-1.8
4,359,870	+				+0.9
4,359,870	+				+0.3
4,359,870	+				+1.0
4,359,871	-				+0.2
4,359,871	-				-0.4
4,359,871	-				+0.2
4,359,871	-				-0.9
4,359,962	+				-0.1
4,359,962	+				-0.8
4,359,963	-				-0.3
4,359,963	-				-1.2
4,359,995	+				-0.6
4,359,995	+				+0.3
4,360,007	+				-0.8
4,360,082	+		PP_3835	0.10	-0.4
4,360,082	+		PP_3835	0.10	+0.2
4,360,108	-		PP_3835	0.13	-0.4
4,360,159	+		PP_3835	0.17	-0.6
4,360,160	-		PP_3835	0.17	-0.8
4,360,162	-		PP_3835	0.17	-0.7
4,360,607	+		PP_3835	0.56	-0.8
4,360,608	+		PP_3835	0.56	+0.2
4,360,609	-		PP_3835	0.56	-1.1
4,360,609	-		PP_3835	0.56	-1.0
4,360,609	-		PP_3835	0.56	-0.2
4,360,740	+		PP_3835	0.67	-0.8
4,360,965	+		PP_3835	0.86	-0.3
4,360,965	+		PP_3835	0.86	-1.1
4,361,033	+				-4.0
4,361,034	-				-0.3
4,361,034	-				-1.6
4,361,034	-				-0.5
4,361,034	-				+0.6
4,361,034	-				-0.9
4,361,042	+				+0.1
4,361,043	-				-3.2
4,361,161	+				-0.0
4,361,289	+		PP_3836	0.30	-0.3
4,361,289	+		PP_3836	0.30	-0.2
4,361,290	-		PP_3836	0.30	+0.1
4,361,290	-		PP_3836	0.30	+0.3
4,361,313	+		PP_3836	0.39	+0.2
4,361,314	-		PP_3836	0.39	-1.6
4,361,314	-		PP_3836	0.39	+0.2
4,361,314	-		PP_3836	0.39	+0.6
4,361,314	-		PP_3836	0.39	+0.3
4,361,314	-		PP_3836	0.39	-1.8
4,361,360	+		PP_3836	0.56	-0.7
4,361,361	-		PP_3836	0.56	-0.7
4,361,387	+		PP_3836	0.66	-1.2
4,361,388	-		PP_3836	0.66	+1.0
4,361,388	-		PP_3836	0.66	+1.1
4,361,437	+		PP_3836	0.84	-1.0
4,361,483	-				-0.4
4,361,488	-				+0.7
4,361,564	-				-0.1
4,361,576	+				-0.7
4,361,576	+				-0.3
4,361,577	-				+0.4
4,361,834	-				+0.4
4,361,876	+				+1.8
4,361,876	+				+0.3
4,361,876	+				-2.2
4,361,908	+				-0.0
4,361,908	+				-0.8
4,361,909	-				-0.4
4,361,993	+		PP_3837	0.30	-0.3
4,361,994	-		PP_3837	0.30	+1.2
4,361,994	-		PP_3837	0.30	-1.2
4,361,994	-		PP_3837	0.30	+0.5
4,361,994	-		PP_3837	0.30	+1.3
4,361,994	-				-0.4
4,362,089	+		PP_3837	0.53	+0.1
4,362,089	+		PP_3837	0.53	+1.1
4,362,089	+		PP_3837	0.53	+1.2