Strain Fitness in Pseudomonas putida KT2440 around PP_3718

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_3717 and PP_3718 overlap by 4 nucleotidesPP_3718 and PP_3719 are separated by 34 nucleotides PP_3717: PP_3717 - Transcriptional regulator, LuxR family, at 4,239,390 to 4,240,289 _3717 PP_3718: PP_3718 - putative aminotransferase, at 4,240,286 to 4,241,698 _3718 PP_3719: PP_3719 - Putrescine-binding periplasmic protein, at 4,241,733 to 4,242,836 _3719 Position (kb) 4240 4241 4242Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4239.302 kb on - strandat 4239.314 kb on + strandat 4239.314 kb on + strandat 4239.317 kb on - strandat 4239.317 kb on - strandat 4239.317 kb on - strandat 4239.328 kb on + strandat 4239.328 kb on + strandat 4239.329 kb on - strandat 4239.329 kb on - strandat 4239.329 kb on - strandat 4239.329 kb on - strandat 4239.481 kb on + strand, within PP_3717at 4239.481 kb on + strand, within PP_3717at 4239.481 kb on + strand, within PP_3717at 4239.481 kb on + strand, within PP_3717at 4239.482 kb on - strand, within PP_3717at 4239.482 kb on - strand, within PP_3717at 4239.521 kb on + strand, within PP_3717at 4239.522 kb on - strand, within PP_3717at 4239.522 kb on - strand, within PP_3717at 4239.522 kb on - strand, within PP_3717at 4239.820 kb on + strand, within PP_3717at 4239.820 kb on + strand, within PP_3717at 4239.820 kb on + strand, within PP_3717at 4239.821 kb on - strandat 4239.821 kb on - strand, within PP_3717at 4239.821 kb on - strand, within PP_3717at 4239.821 kb on - strand, within PP_3717at 4239.821 kb on - strand, within PP_3717at 4239.823 kb on + strand, within PP_3717at 4239.824 kb on - strand, within PP_3717at 4239.824 kb on - strand, within PP_3717at 4239.824 kb on - strand, within PP_3717at 4239.854 kb on - strand, within PP_3717at 4239.856 kb on + strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.857 kb on - strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.865 kb on + strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.866 kb on - strand, within PP_3717at 4239.868 kb on + strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.869 kb on - strand, within PP_3717at 4239.913 kb on + strand, within PP_3717at 4239.913 kb on + strand, within PP_3717at 4239.914 kb on - strand, within PP_3717at 4239.967 kb on + strand, within PP_3717at 4239.982 kb on + strand, within PP_3717at 4239.982 kb on + strand, within PP_3717at 4239.983 kb on - strand, within PP_3717at 4239.983 kb on - strand, within PP_3717at 4240.030 kb on + strand, within PP_3717at 4240.030 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.117 kb on + strand, within PP_3717at 4240.245 kb on - strandat 4240.299 kb on + strandat 4240.608 kb on + strand, within PP_3718at 4240.609 kb on - strand, within PP_3718at 4240.704 kb on + strand, within PP_3718at 4240.708 kb on + strand, within PP_3718at 4240.708 kb on + strand, within PP_3718at 4240.709 kb on - strand, within PP_3718at 4240.709 kb on - strand, within PP_3718at 4240.709 kb on - strand, within PP_3718at 4240.798 kb on - strand, within PP_3718at 4240.798 kb on - strand, within PP_3718at 4240.926 kb on + strand, within PP_3718at 4240.926 kb on + strand, within PP_3718at 4240.927 kb on - strand, within PP_3718at 4240.959 kb on + strand, within PP_3718at 4240.959 kb on + strandat 4240.959 kb on + strand, within PP_3718at 4241.116 kb on - strand, within PP_3718at 4241.157 kb on + strand, within PP_3718at 4241.158 kb on - strand, within PP_3718at 4241.235 kb on + strand, within PP_3718at 4241.236 kb on - strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.284 kb on - strand, within PP_3718at 4241.286 kb on + strand, within PP_3718at 4241.457 kb on - strand, within PP_3718at 4241.457 kb on - strand, within PP_3718at 4241.457 kb on - strand, within PP_3718at 4241.556 kb on + strand, within PP_3718at 4241.620 kb on - strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.632 kb on - strandat 4241.632 kb on - strandat 4241.839 kb on + strandat 4241.839 kb on + strandat 4241.840 kb on - strandat 4241.840 kb on - strandat 4241.914 kb on + strand, within PP_3719at 4241.914 kb on + strand, within PP_3719at 4241.915 kb on - strand, within PP_3719at 4242.004 kb on + strand, within PP_3719at 4242.004 kb on + strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.104 kb on - strand, within PP_3719at 4242.160 kb on + strand, within PP_3719at 4242.160 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strandat 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.184 kb on - strand, within PP_3719at 4242.184 kb on - strand, within PP_3719at 4242.187 kb on + strand, within PP_3719at 4242.187 kb on + strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.265 kb on + strand, within PP_3719at 4242.266 kb on - strand, within PP_3719at 4242.415 kb on + strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.442 kb on + strand, within PP_3719at 4242.442 kb on + strand, within PP_3719at 4242.443 kb on - strand, within PP_3719at 4242.455 kb on - strand, within PP_3719at 4242.455 kb on - strand, within PP_3719at 4242.455 kb on - strand, within PP_3719at 4242.647 kb on - strand, within PP_3719at 4242.647 kb on - strand, within PP_3719at 4242.664 kb on + strand, within PP_3719at 4242.664 kb on + strand, within PP_3719at 4242.665 kb on - strand, within PP_3719at 4242.665 kb on - strand, within PP_3719

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with 55.5 mM D-Glucose; pH 4.6
remove
4,239,302 - -0.4
4,239,314 + +0.6
4,239,314 + -1.4
4,239,317 - +0.2
4,239,317 - +0.3
4,239,317 - +0.2
4,239,328 + +0.4
4,239,328 + +0.8
4,239,329 - -0.6
4,239,329 - -0.4
4,239,329 - -1.0
4,239,329 - +0.0
4,239,481 + PP_3717 0.10 -0.9
4,239,481 + PP_3717 0.10 -0.2
4,239,481 + PP_3717 0.10 +0.2
4,239,481 + PP_3717 0.10 +0.4
4,239,482 - PP_3717 0.10 +0.4
4,239,482 - PP_3717 0.10 -0.2
4,239,521 + PP_3717 0.15 +0.5
4,239,522 - PP_3717 0.15 +0.1
4,239,522 - PP_3717 0.15 +0.3
4,239,522 - PP_3717 0.15 -0.1
4,239,820 + PP_3717 0.48 -0.3
4,239,820 + PP_3717 0.48 +0.5
4,239,820 + PP_3717 0.48 -0.6
4,239,821 - +1.2
4,239,821 - PP_3717 0.48 -1.0
4,239,821 - PP_3717 0.48 -0.0
4,239,821 - PP_3717 0.48 +0.3
4,239,821 - PP_3717 0.48 +0.3
4,239,823 + PP_3717 0.48 +0.4
4,239,824 - PP_3717 0.48 -0.6
4,239,824 - PP_3717 0.48 -0.8
4,239,824 - PP_3717 0.48 +0.8
4,239,854 - PP_3717 0.52 +0.1
4,239,856 + PP_3717 0.52 +1.6
4,239,857 - PP_3717 0.52 +2.5
4,239,857 - PP_3717 0.52 +2.0
4,239,857 - PP_3717 0.52 -0.8
4,239,857 - PP_3717 0.52 +0.4
4,239,865 + PP_3717 0.53 -0.5
4,239,865 + PP_3717 0.53 +1.0
4,239,865 + PP_3717 0.53 -0.2
4,239,865 + PP_3717 0.53 +0.5
4,239,865 + PP_3717 0.53 +0.0
4,239,866 - PP_3717 0.53 +0.6
4,239,866 - PP_3717 0.53 -0.4
4,239,866 - PP_3717 0.53 +0.3
4,239,866 - PP_3717 0.53 -0.1
4,239,866 - PP_3717 0.53 +0.9
4,239,868 + PP_3717 0.53 -0.0
4,239,869 - PP_3717 0.53 +0.1
4,239,869 - PP_3717 0.53 +1.2
4,239,869 - PP_3717 0.53 -1.1
4,239,869 - PP_3717 0.53 -0.1
4,239,913 + PP_3717 0.58 -0.4
4,239,913 + PP_3717 0.58 +1.0
4,239,914 - PP_3717 0.58 -0.1
4,239,967 + PP_3717 0.64 -0.8
4,239,982 + PP_3717 0.66 +0.2
4,239,982 + PP_3717 0.66 -0.1
4,239,983 - PP_3717 0.66 -0.3
4,239,983 - PP_3717 0.66 -0.3
4,240,030 + PP_3717 0.71 +0.6
4,240,030 + PP_3717 0.71 +0.3
4,240,117 + PP_3717 0.81 -0.8
4,240,117 + PP_3717 0.81 -0.2
4,240,117 + PP_3717 0.81 +1.4
4,240,117 + PP_3717 0.81 -0.3
4,240,245 - -2.2
4,240,299 + -0.1
4,240,608 + PP_3718 0.23 +0.1
4,240,609 - PP_3718 0.23 -0.4
4,240,704 + PP_3718 0.30 +0.5
4,240,708 + PP_3718 0.30 +0.2
4,240,708 + PP_3718 0.30 -0.2
4,240,709 - PP_3718 0.30 -0.1
4,240,709 - PP_3718 0.30 +0.3
4,240,709 - PP_3718 0.30 -0.0
4,240,798 - PP_3718 0.36 -0.3
4,240,798 - PP_3718 0.36 +3.7
4,240,926 + PP_3718 0.45 +0.6
4,240,926 + PP_3718 0.45 +1.0
4,240,927 - PP_3718 0.45 -0.6
4,240,959 + PP_3718 0.48 -1.3
4,240,959 + -0.8
4,240,959 + PP_3718 0.48 -0.2
4,241,116 - PP_3718 0.59 +1.0
4,241,157 + PP_3718 0.62 +0.0
4,241,158 - PP_3718 0.62 -0.6
4,241,235 + PP_3718 0.67 +0.7
4,241,236 - PP_3718 0.67 +0.2
4,241,283 + PP_3718 0.71 -0.2
4,241,283 + PP_3718 0.71 -0.3
4,241,283 + PP_3718 0.71 +0.0
4,241,284 - PP_3718 0.71 +1.2
4,241,286 + PP_3718 0.71 +0.2
4,241,457 - PP_3718 0.83 +1.5
4,241,457 - PP_3718 0.83 -1.8
4,241,457 - PP_3718 0.83 +0.2
4,241,556 + PP_3718 0.90 +1.4
4,241,620 - +0.4
4,241,631 + +0.2
4,241,631 + +0.7
4,241,631 + +0.6
4,241,631 + +0.2
4,241,631 + +0.6
4,241,631 + +0.0
4,241,632 - +0.3
4,241,632 - +0.1
4,241,839 + -0.6
4,241,839 + +0.2
4,241,840 - +0.0
4,241,840 - -0.3
4,241,914 + PP_3719 0.16 +0.2
4,241,914 + PP_3719 0.16 -0.3
4,241,915 - PP_3719 0.16 +0.1
4,242,004 + PP_3719 0.25 -1.8
4,242,004 + PP_3719 0.25 -0.7
4,242,005 - PP_3719 0.25 -0.3
4,242,005 - PP_3719 0.25 -0.1
4,242,005 - PP_3719 0.25 -1.8
4,242,005 - PP_3719 0.25 +0.2
4,242,104 - PP_3719 0.34 -0.5
4,242,160 + PP_3719 0.39 -0.8
4,242,160 + PP_3719 0.39 -0.3
4,242,183 + PP_3719 0.41 +0.2
4,242,183 + +1.2
4,242,183 + PP_3719 0.41 +0.2
4,242,183 + PP_3719 0.41 -0.6
4,242,183 + PP_3719 0.41 +0.4
4,242,183 + PP_3719 0.41 +0.7
4,242,184 - PP_3719 0.41 +0.7
4,242,184 - PP_3719 0.41 +1.3
4,242,187 + PP_3719 0.41 -1.1
4,242,187 + PP_3719 0.41 +0.4
4,242,188 - PP_3719 0.41 -0.1
4,242,188 - PP_3719 0.41 -0.3
4,242,188 - PP_3719 0.41 +0.1
4,242,188 - PP_3719 0.41 +0.4
4,242,188 - PP_3719 0.41 -1.2
4,242,188 - PP_3719 0.41 +0.5
4,242,188 - PP_3719 0.41 -0.6
4,242,188 - PP_3719 0.41 -0.1
4,242,188 - PP_3719 0.41 +0.4
4,242,188 - PP_3719 0.41 -0.3
4,242,265 + PP_3719 0.48 +0.3
4,242,266 - PP_3719 0.48 -0.1
4,242,415 + PP_3719 0.62 +0.2
4,242,416 - PP_3719 0.62 +0.2
4,242,416 - PP_3719 0.62 +1.0
4,242,416 - PP_3719 0.62 -1.0
4,242,416 - PP_3719 0.62 +0.9
4,242,442 + PP_3719 0.64 -0.4
4,242,442 + PP_3719 0.64 -2.2
4,242,443 - PP_3719 0.64 -0.5
4,242,455 - PP_3719 0.65 -0.4
4,242,455 - PP_3719 0.65 -1.3
4,242,455 - PP_3719 0.65 -0.2
4,242,647 - PP_3719 0.83 +4.6
4,242,647 - PP_3719 0.83 -0.2
4,242,664 + PP_3719 0.84 -1.8
4,242,664 + PP_3719 0.84 +0.7
4,242,665 - PP_3719 0.84 -0.1
4,242,665 - PP_3719 0.84 -0.1

Or see this region's nucleotide sequence