Strain Fitness in Pseudomonas putida KT2440 around PP_2994

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
3,390,019	+		PP_2992	0.41	+0.1
3,390,019	+		PP_2992	0.41	-0.3
3,390,019	+		PP_2992	0.41	+1.0
3,390,020	-		PP_2992	0.41	-0.0
3,390,054	-		PP_2992	0.46	+0.1
3,390,094	+		PP_2992	0.50	-0.6
3,390,094	+		PP_2992	0.50	-0.1
3,390,095	-		PP_2992	0.51	+0.4
3,390,123	-		PP_2992	0.54	+0.1
3,390,202	+		PP_2992	0.64	-0.8
3,390,202	+		PP_2992	0.64	-0.6
3,390,202	+		PP_2992	0.64	-1.1
3,390,202	+				+0.1
3,390,203	-		PP_2992	0.64	-2.2
3,390,272	-		PP_2992	0.73	-1.0
3,390,272	-		PP_2992	0.73	+0.8
3,390,316	-		PP_2992	0.78	-0.1
3,390,349	+		PP_2992	0.82	+0.1
3,390,368	+		PP_2992	0.85	-1.0
3,390,369	-		PP_2992	0.85	-0.1
3,390,450	+				-0.9
3,390,450	+				+0.6
3,390,450	+				-0.4
3,390,450	+				-0.7
3,390,451	-				+0.0
3,390,451	-				-0.1
3,390,457	-				-0.3
3,390,457	-				+0.7
3,390,532	+				-0.9
3,390,569	-				+1.1
3,390,569	-				-0.4
3,390,569	-				+0.7
3,390,730	+				-0.5
3,390,740	-				-0.2
3,390,757	+				+0.3
3,390,758	-				-1.1
3,390,918	-		PP_2994	0.10	+0.8
3,390,918	-		PP_2994	0.10	-0.1
3,390,952	+		PP_2994	0.13	+0.1
3,390,952	+		PP_2994	0.13	+0.8
3,390,952	+		PP_2994	0.13	-0.9
3,390,953	-		PP_2994	0.13	+0.8
3,391,009	-		PP_2994	0.17	+2.3
3,391,012	-		PP_2994	0.18	+4.6
3,391,012	-		PP_2994	0.18	+0.5
3,391,012	-		PP_2994	0.18	+1.5
3,391,092	+		PP_2994	0.24	-2.7
3,391,092	+		PP_2994	0.24	-0.6
3,391,231	+		PP_2994	0.35	+0.4
3,391,231	+		PP_2994	0.35	+0.6
3,391,232	-		PP_2994	0.35	+1.5
3,391,540	-		PP_2994	0.60	+1.5
3,391,540	-		PP_2994	0.60	+0.8
3,391,540	-		PP_2994	0.60	-0.0
3,391,540	-		PP_2994	0.60	+0.5
3,391,568	+		PP_2994	0.62	+0.7
3,391,568	+		PP_2994	0.62	-0.0
3,391,568	+		PP_2994	0.62	-0.9
3,391,568	+		PP_2994	0.62	-0.1
3,391,629	-		PP_2994	0.67	-0.3
3,391,693	+		PP_2994	0.72	-0.2
3,391,696	-		PP_2994	0.72	-1.0
3,391,696	-		PP_2994	0.72	+1.1
3,391,879	-		PP_2994	0.87	+0.1
3,392,021	+				+0.8
3,392,076	+				+0.7
3,392,168	-				-0.4
3,392,191	+				-0.5
3,392,191	+				+0.1
3,392,373	+		PP_2995	0.29	+1.0
3,392,373	+		PP_2995	0.29	-0.6
3,392,374	-		PP_2995	0.29	+1.5
3,392,381	+		PP_2995	0.31	-0.1
3,392,382	-		PP_2995	0.31	-1.2
3,392,382	-		PP_2995	0.31	+0.4
3,392,382	-		PP_2995	0.31	-0.6
3,392,382	-		PP_2995	0.31	-0.4
3,392,463	-		PP_2995	0.46	-0.5
3,392,463	-		PP_2995	0.46	-0.3
3,392,698	-		PP_2995	0.89	+0.8
3,392,784	+				+0.1
3,392,784	+				+0.1
3,392,784	+				+0.9
3,392,784	+				+1.0
3,392,785	-				+0.2
3,392,785	-				+1.4
3,392,785	-				+0.2
3,392,785	-				-0.6
3,392,785	-				+0.8
3,392,821	+				+0.5
3,392,821	+				-1.2
3,392,822	-				+0.1
3,392,822	-				-0.2
3,392,861	-				+0.7
3,392,879	+		PP_2996	0.13	-0.3
3,392,879	+		PP_2996	0.13	-0.4
3,392,880	-		PP_2996	0.13	+0.5
3,392,880	-		PP_2996	0.13	+0.1
3,392,915	+		PP_2996	0.21	-0.3
3,392,945	+		PP_2996	0.27	-0.5
3,392,946	-		PP_2996	0.27	+1.1