Strain Fitness in Pseudomonas putida KT2440 around PP_2958

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
3,361,588	-		PP_2957	0.21	+1.3
3,361,660	+		PP_2957	0.27	-0.1
3,361,661	-		PP_2957	0.27	-0.5
3,361,661	-		PP_2957	0.27	-0.2
3,361,718	+		PP_2957	0.33	+0.2
3,361,718	+		PP_2957	0.33	+0.4
3,361,733	+		PP_2957	0.34	-0.1
3,361,734	-		PP_2957	0.34	+0.1
3,361,761	-		PP_2957	0.37	-1.4
3,361,761	-		PP_2957	0.37	+0.4
3,361,763	+		PP_2957	0.37	-0.1
3,361,764	-		PP_2957	0.37	-0.8
3,361,764	-		PP_2957	0.37	-0.1
3,361,841	+		PP_2957	0.44	+0.0
3,361,841	+		PP_2957	0.44	+0.0
3,361,844	+		PP_2957	0.44	-0.8
3,361,845	-		PP_2957	0.44	+1.0
3,362,113	-		PP_2957	0.69	-0.2
3,362,237	-		PP_2957	0.80	+0.2
3,362,309	+		PP_2957	0.87	-0.4
3,362,310	-		PP_2957	0.87	+0.5
3,362,377	-				+2.0
3,362,474	+				-0.8
3,362,475	-				+0.9
3,362,475	-				+0.6
3,362,478	+				+0.2
3,362,479	-				+0.5
3,362,479	-				+0.1
3,362,506	+				+1.1
3,362,506	+				+2.7
3,362,506	+				-2.7
3,362,507	-				-0.2
3,362,507	-				-0.9
3,362,507	-				+0.1
3,362,634	+		PP_2958	0.34	-0.3
3,362,634	+		PP_2958	0.34	-2.1
3,362,634	+		PP_2958	0.34	-2.4
3,362,635	-		PP_2958	0.35	-0.5
3,362,761	+		PP_2958	0.84	+0.4
3,362,780	+				+0.3
3,362,780	+				+1.5
3,362,781	-				-1.1
3,362,781	-				-0.5
3,362,781	-				-0.3
3,362,782	+				-0.6
3,362,782	+				+0.3
3,362,782	+				+0.1
3,362,782	+				+0.1
3,362,782	+				+0.0
3,362,782	+				+0.0
3,362,783	-				+0.9
3,362,783	-				-1.4
3,362,783	-				+0.1
3,362,783	-				-0.5
3,362,783	-				-0.2
3,362,783	-				+0.2
3,362,786	+				-0.2
3,362,786	+				+0.4
3,362,786	+				+0.1
3,362,787	-				-1.5
3,362,787	-				-0.7
3,362,808	+				-0.2
3,362,817	-				-1.5
3,362,867	+		PP_2959	0.10	+0.6
3,362,868	-		PP_2959	0.10	+0.3
3,362,920	-		PP_2959	0.20	-0.5
3,362,925	+		PP_2959	0.21	-1.3
3,362,926	-		PP_2959	0.21	-0.0
3,363,168	+		PP_2959	0.68	+0.1
3,363,168	+		PP_2959	0.68	-1.3
3,363,169	-		PP_2959	0.68	-0.9
3,363,322	-				+0.1
3,363,324	+				+0.5
3,363,325	-				-0.5
3,363,348	-				+0.1
3,363,369	+				+0.1
3,363,387	+				+0.9
3,363,387	+				-0.4
3,363,387	+				-1.2
3,363,387	+				+0.3
3,363,387	+				-1.5
3,363,387	+				-0.0
3,363,388	-				-0.1
3,363,388	-				+0.8
3,363,388	-				+0.2
3,363,390	+				+0.8
3,363,390	+				+0.1
3,363,391	-				+0.6
3,363,391	-				+0.1
3,363,431	+				+0.5
3,363,431	+				+0.6
3,363,432	-				-0.2
3,363,432	-				-2.5
3,363,432	-				+0.4
3,363,482	+				-0.6
3,363,482	+				-2.9
3,363,482	+				-0.9
3,363,483	-				-0.2
3,363,486	+				+0.7
3,363,487	-				+0.5
3,363,487	-				+0.4
3,363,507	+				-0.3
3,363,710	+		PP_2960	0.30	+0.8
3,363,711	-		PP_2960	0.30	+0.4