Strain Fitness in Pseudomonas putida KT2440 around PP_2909

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
3,306,846	+				+1.2
3,306,846	+				-0.2
3,306,846	+				+0.1
3,306,847	-				+1.0
3,306,904	+				+0.9
3,307,123	+		PP_2908	0.32	+1.1
3,307,124	-				+1.3
3,307,231	-		PP_2908	0.47	+0.5
3,307,231	-		PP_2908	0.47	-0.6
3,307,231	-		PP_2908	0.47	+1.8
3,307,253	+		PP_2908	0.50	-0.3
3,307,254	-		PP_2908	0.50	+0.7
3,307,254	-		PP_2908	0.50	+0.6
3,307,254	-		PP_2908	0.50	+0.3
3,307,348	+		PP_2908	0.64	-0.2
3,307,349	-		PP_2908	0.64	-0.1
3,307,474	+		PP_2908	0.82	+1.7
3,307,631	-				+0.1
3,307,673	+				+0.1
3,307,673	+				+2.1
3,307,854	+				+0.9
3,307,968	+		PP_2909	0.18	-0.5
3,307,969	-		PP_2909	0.18	-0.2
3,308,172	+		PP_2909	0.39	-0.1
3,308,173	-		PP_2909	0.39	-0.1
3,308,196	+		PP_2909	0.41	-0.3
3,308,197	-		PP_2909	0.41	-0.8
3,308,197	-		PP_2909	0.41	+0.7
3,308,197	-		PP_2909	0.41	+0.1
3,308,520	+		PP_2909	0.74	-0.5
3,308,521	-		PP_2909	0.74	-0.5
3,308,521	-		PP_2909	0.74	+0.8
3,308,521	-		PP_2909	0.74	-1.3
3,308,550	+		PP_2909	0.77	-0.3
3,308,630	-		PP_2909	0.85	-1.9
3,308,630	-		PP_2909	0.85	-0.9
3,308,630	-		PP_2909	0.85	-0.3
3,308,754	+				-1.9
3,308,754	+				+0.4
3,308,755	-				-2.2
3,308,769	+				-0.7
3,308,879	+				-0.2
3,308,880	-				+0.3
3,308,880	-				-0.2
3,308,955	+				+0.2
3,309,048	+		PP_2910	0.13	+0.1
3,309,049	-		PP_2910	0.13	+1.2
3,309,049	-		PP_2910	0.13	-0.1
3,309,049	-		PP_2910	0.13	-0.3
3,309,049	-		PP_2910	0.13	+0.1
3,309,049	-		PP_2910	0.13	-1.1
3,309,051	+		PP_2910	0.13	+0.7
3,309,051	+		PP_2910	0.13	+0.8
3,309,051	+		PP_2910	0.13	+0.6
3,309,052	-		PP_2910	0.13	-0.1
3,309,052	-		PP_2910	0.13	+0.2
3,309,234	+		PP_2910	0.28	+0.9
3,309,234	+		PP_2910	0.28	+0.5
3,309,235	-		PP_2910	0.28	+0.3
3,309,235	-		PP_2910	0.28	+1.5
3,309,324	+		PP_2910	0.35	+0.2
3,309,558	+		PP_2910	0.54	+1.9
3,309,559	-		PP_2910	0.54	+1.4
3,309,559	-		PP_2910	0.54	-1.8
3,309,559	-		PP_2910	0.54	+0.1
3,309,561	+		PP_2910	0.54	+0.4