Strain Fitness in Pseudomonas putida KT2440 around PP_2080

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
2,366,377	-		PP_2078	0.90	+0.3
2,366,377	-		PP_2078	0.90	-0.2
2,366,377	-		PP_2078	0.90	+0.5
2,366,504	-				-1.5
2,366,545	-				-0.4
2,366,545	-				-1.9
2,366,657	-		PP_2079	0.22	-1.2
2,366,733	+				-1.5
2,366,734	-		PP_2079	0.39	+0.7
2,366,965	+		PP_2079	0.90	-0.2
2,366,965	+		PP_2079	0.90	+0.3
2,366,965	+		PP_2079	0.90	-0.2
2,366,965	+		PP_2079	0.90	+0.4
2,366,966	-		PP_2079	0.90	-0.2
2,366,966	-		PP_2079	0.90	-2.2
2,366,966	-		PP_2079	0.90	+0.1
2,367,016	+				-0.5
2,367,016	+				+2.8
2,367,016	+				-1.3
2,367,017	-				-0.1
2,367,088	-				+1.1
2,367,154	+				-1.2
2,367,176	-				-0.1
2,367,176	-				-3.5
2,367,420	+				-1.9
2,367,420	+				-2.6
2,367,421	-				-0.4
2,367,421	-				-1.5
2,367,432	+				-1.0
2,367,433	-				-2.0
2,367,643	-				-0.3
2,367,658	-				-0.5
2,367,658	-				+0.6
2,367,736	+		PP_2080	0.11	-0.6
2,367,736	+		PP_2080	0.11	-0.5
2,367,790	+		PP_2080	0.12	-1.4
2,367,895	-		PP_2080	0.15	-2.7
2,367,895	-		PP_2080	0.15	-1.9
2,368,020	+		PP_2080	0.17	-1.2
2,368,021	-		PP_2080	0.17	-0.7
2,368,021	-		PP_2080	0.17	-0.4
2,368,021	-		PP_2080	0.17	-0.1
2,368,021	-		PP_2080	0.17	-0.9
2,368,110	+		PP_2080	0.19	-0.5
2,368,111	-		PP_2080	0.19	-1.3
2,368,111	-		PP_2080	0.19	-0.8
2,368,111	-		PP_2080	0.19	-2.5
2,368,176	+		PP_2080	0.20	+0.9
2,368,176	+		PP_2080	0.20	-0.7
2,368,176	+		PP_2080	0.20	-0.5
2,368,192	-		PP_2080	0.21	-0.2
2,368,219	-		PP_2080	0.21	+0.7
2,368,219	-		PP_2080	0.21	-0.8
2,368,219	-		PP_2080	0.21	-1.3
2,368,440	+		PP_2080	0.26	-1.6
2,368,441	-		PP_2080	0.26	+0.1
2,368,471	-		PP_2080	0.26	+0.1
2,368,610	+		PP_2080	0.29	+0.4
2,368,851	+		PP_2080	0.34	-1.2
2,368,899	+		PP_2080	0.35	-0.9
2,368,900	-		PP_2080	0.35	-0.9
2,369,040	+		PP_2080	0.38	-1.9
2,369,241	+		PP_2080	0.42	-2.9
2,369,242	-		PP_2080	0.42	-1.6
2,369,244	-		PP_2080	0.42	-1.5
2,369,462	+		PP_2080	0.47	-1.4
2,369,472	+		PP_2080	0.47	-1.2
2,369,472	+		PP_2080	0.47	-0.7
2,369,473	-		PP_2080	0.47	-0.0
2,369,505	+		PP_2080	0.48	-1.1
2,369,505	+		PP_2080	0.48	-1.1
2,369,572	+		PP_2080	0.49	+0.2
2,369,572	+		PP_2080	0.49	-1.0
2,369,572	+		PP_2080	0.49	+0.5
2,369,573	-		PP_2080	0.49	-0.9
2,369,812	-		PP_2080	0.54	-1.8
2,369,913	+		PP_2080	0.56	-0.8
2,369,914	-		PP_2080	0.56	-2.6
2,370,031	-		PP_2080	0.59	-0.6
2,370,053	+		PP_2080	0.59	-3.5
2,370,227	+		PP_2080	0.63	-0.8
2,370,228	-		PP_2080	0.63	-1.9
2,370,228	-		PP_2080	0.63	-0.9
2,370,494	+		PP_2080	0.68	-0.5
2,370,495	-		PP_2080	0.68	-0.7
2,370,495	-		PP_2080	0.68	-2.4
2,370,498	+		PP_2080	0.68	-1.6
2,370,498	+		PP_2080	0.68	-1.2
2,370,498	+		PP_2080	0.68	-1.7
2,370,499	-		PP_2080	0.68	-1.0
2,370,589	+		PP_2080	0.70	+0.1
2,370,590	-		PP_2080	0.70	-1.0
2,370,590	-		PP_2080	0.70	-2.2
2,370,590	-		PP_2080	0.70	-0.5
2,370,834	+		PP_2080	0.75	-1.0
2,370,834	+		PP_2080	0.75	-0.5
2,370,834	+		PP_2080	0.75	-0.2
2,370,834	+		PP_2080	0.75	-2.5
2,370,834	+		PP_2080	0.75	-0.9
2,370,834	+		PP_2080	0.75	-1.7
2,370,835	-		PP_2080	0.75	-0.1
2,370,895	-		PP_2080	0.76	-1.5
2,371,226	+		PP_2080	0.83	-1.3
2,371,227	-		PP_2080	0.83	-0.7
2,371,290	+		PP_2080	0.84	+0.1
2,371,291	-		PP_2080	0.84	-1.6
2,371,291	-		PP_2080	0.84	-1.0
2,371,291	-		PP_2080	0.84	-0.3
2,371,291	-		PP_2080	0.84	-1.2
2,371,307	+		PP_2080	0.85	-0.9
2,371,353	+		PP_2080	0.86	-1.0
2,371,353	+		PP_2080	0.86	-1.3
2,371,354	-		PP_2080	0.86	-1.5
2,371,604	+				-0.6
2,371,604	+				-0.5
2,371,605	-				-0.9
2,371,605	-				-1.5
2,371,605	-				+0.5
2,371,629	+				-2.7
2,371,629	+				+1.1
2,371,629	+				-1.3
2,371,629	+				-3.0
2,371,629	+				-1.9
2,371,629	+				-0.1
2,371,630	-				-2.3
2,371,630	-				-2.7
2,371,630	-				-0.1
2,371,630	-				-3.3
2,371,734	+				-2.7
2,371,735	-				-0.7
2,371,971	+				-1.2
2,371,972	-				-1.4
2,371,980	+				-1.7
2,371,981	-				-1.0
2,371,981	-				-1.9
2,372,055	+				-0.6
2,372,055	+				+0.8
2,372,055	+				+0.4
2,372,055	+				+0.1
2,372,056	-				-0.4
2,372,056	-				-1.5
2,372,056	-				+0.9
2,372,056	-				+1.1
2,372,056	-				-0.7
2,372,056	-				+0.7
2,372,056	-				-0.5
2,372,056	-				-3.0
2,372,056	-				-1.7
2,372,063	+				+0.3
2,372,141	+				-0.6
2,372,141	+				-0.2
2,372,142	-				-0.2
2,372,161	+				-1.0
2,372,240	+				+0.4
2,372,314	+		PP_2081	0.19	-1.5
2,372,488	+		PP_2081	0.40	-1.5
2,372,488	+		PP_2081	0.40	+0.9
2,372,488	+		PP_2081	0.40	-1.6
2,372,488	+		PP_2081	0.40	-1.5
2,372,488	+		PP_2081	0.40	+0.5
2,372,488	+		PP_2081	0.40	-1.5
2,372,489	-				-0.9
2,372,489	-		PP_2081	0.40	+0.4
2,372,489	-		PP_2081	0.40	+0.5
2,372,552	-		PP_2081	0.48	-1.5
2,372,555	-		PP_2081	0.48	-0.1
2,372,617	+		PP_2081	0.56	-2.5
2,372,618	-		PP_2081	0.56	-0.1
2,372,618	-		PP_2081	0.56	+0.6
2,372,863	+		PP_2081	0.86	-1.2
2,372,864	-		PP_2081	0.86	+1.0
2,372,864	-		PP_2081	0.86	-0.5
2,372,864	-		PP_2081	0.86	+0.5
2,372,864	-		PP_2081	0.86	-1.9
2,372,940	-				+0.1
2,372,995	-				+0.0
2,373,022	-				+0.9
2,373,022	-				+0.1
2,373,022	-				-1.5
2,373,022	-				+0.3
2,373,022	-				+0.8
2,373,022	-				+1.1