Strain Fitness in Pseudomonas putida KT2440 around PP_1063

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with 55.5 mM D-Glucose; pH 4.6
1,216,699	+				+0.7
1,216,699	+				-1.3
1,216,700	-				-0.1
1,216,968	-				-0.1
1,217,007	+				+0.2
1,217,225	+		PP_1062	0.31	+0.9
1,217,225	+		PP_1062	0.31	-0.3
1,217,226	-		PP_1062	0.32	+1.2
1,217,287	-		PP_1062	0.46	+0.1
1,217,565	+				-1.1
1,217,565	+				+0.4
1,217,566	-				-0.1
1,217,566	-				+0.4
1,217,566	-				-1.6
1,217,566	-				-1.7
1,217,601	+		PP_1063	0.12	-0.2
1,217,602	-		PP_1063	0.12	+0.2
1,217,602	-		PP_1063	0.12	-0.6
1,217,602	-		PP_1063	0.12	+0.2
1,217,649	+		PP_1063	0.17	+0.7
1,217,649	+		PP_1063	0.17	+0.2
1,217,649	+		PP_1063	0.17	+0.0
1,217,650	-		PP_1063	0.17	+1.2
1,217,664	+		PP_1063	0.19	-0.8
1,217,749	+		PP_1063	0.28	+1.0
1,217,750	-		PP_1063	0.28	+0.2
1,217,827	-		PP_1063	0.36	+0.2
1,217,868	+		PP_1063	0.41	-0.2
1,217,868	+		PP_1063	0.41	+0.6
1,217,868	+		PP_1063	0.41	-0.8
1,217,868	+		PP_1063	0.41	-0.7
1,217,868	+		PP_1063	0.41	-0.3
1,217,868	+		PP_1063	0.41	+1.1
1,217,868	+		PP_1063	0.41	-0.9
1,217,868	+		PP_1063	0.41	-0.0
1,217,869	-		PP_1063	0.41	-2.6
1,217,869	-		PP_1063	0.41	+0.4
1,217,919	+		PP_1063	0.47	-0.2
1,217,937	+		PP_1063	0.48	-0.2
1,217,937	+		PP_1063	0.48	-0.9
1,217,937	+		PP_1063	0.48	-0.1
1,217,937	+				+0.2
1,217,937	+		PP_1063	0.48	-0.8
1,217,938	-		PP_1063	0.49	-0.6
1,217,938	-		PP_1063	0.49	+0.2
1,218,516	+				+0.8
1,218,517	-				+0.5
1,218,725	+		PP_1064	0.23	-1.3
1,218,726	-		PP_1064	0.23	+0.7
1,218,851	+		PP_1064	0.34	-0.4
1,218,851	+		PP_1064	0.34	-2.3
1,218,852	-		PP_1064	0.34	-0.3
1,218,929	+		PP_1064	0.41	+1.7
1,218,929	+		PP_1064	0.41	+0.2
1,218,929	+		PP_1064	0.41	+0.2
1,218,930	-		PP_1064	0.41	+0.8
1,218,959	+		PP_1064	0.44	+0.2
1,218,960	-		PP_1064	0.44	-1.3
1,219,029	+		PP_1064	0.50	+0.2
1,219,030	-		PP_1064	0.50	-0.3
1,219,252	-		PP_1064	0.69	-0.1
1,219,252	-		PP_1064	0.69	-0.4
1,219,296	-		PP_1064	0.73	-1.0
1,219,404	+		PP_1064	0.83	-0.1
1,219,404	+		PP_1064	0.83	+0.8