Strain Fitness in Pseudomonas putida KT2440 around PP_0596

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0595 and PP_0596 are separated by 118 nucleotidesPP_0596 and PP_0597 are separated by 73 nucleotides PP_0595: PP_0595 - Transcriptional regulator, LysR family, at 693,124 to 694,041 _0595 PP_0596: PP_0596 - Omega-amino acid--pyruvate aminotransferase, at 694,160 to 695,506 _0596 PP_0597: PP_0597 - methylmalonate-semialdehyde dehydrogenase, at 695,580 to 697,073 _0597 Position (kb) 694 695 696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 693.276 kb on - strand, within PP_0595at 693.276 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.298 kb on - strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.300 kb on - strand, within PP_0595at 693.309 kb on + strand, within PP_0595at 693.371 kb on + strand, within PP_0595at 693.372 kb on - strand, within PP_0595at 693.372 kb on - strand, within PP_0595at 693.464 kb on + strand, within PP_0595at 693.525 kb on - strand, within PP_0595at 693.678 kb on + strand, within PP_0595at 693.679 kb on - strand, within PP_0595at 693.679 kb on - strand, within PP_0595at 693.809 kb on + strand, within PP_0595at 693.810 kb on - strand, within PP_0595at 693.810 kb on - strand, within PP_0595at 693.931 kb on + strand, within PP_0595at 693.978 kb on - strandat 693.978 kb on - strandat 694.042 kb on + strandat 694.042 kb on + strandat 694.043 kb on - strandat 694.043 kb on - strandat 694.070 kb on - strandat 694.094 kb on + strandat 694.111 kb on - strandat 694.137 kb on - strandat 694.230 kb on - strandat 694.230 kb on - strandat 694.289 kb on + strandat 694.290 kb on - strandat 694.290 kb on - strandat 694.403 kb on - strand, within PP_0596at 694.412 kb on + strand, within PP_0596at 694.412 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.506 kb on - strand, within PP_0596at 694.506 kb on - strand, within PP_0596at 694.507 kb on + strand, within PP_0596at 694.559 kb on + strand, within PP_0596at 694.560 kb on - strand, within PP_0596at 694.616 kb on + strand, within PP_0596at 694.617 kb on - strand, within PP_0596at 694.639 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.717 kb on - strand, within PP_0596at 694.717 kb on - strand, within PP_0596at 694.881 kb on - strand, within PP_0596at 695.079 kb on - strand, within PP_0596at 695.111 kb on + strand, within PP_0596at 695.112 kb on - strand, within PP_0596at 695.136 kb on - strand, within PP_0596at 695.136 kb on - strand, within PP_0596at 695.141 kb on + strand, within PP_0596at 695.142 kb on - strand, within PP_0596at 695.142 kb on - strand, within PP_0596at 695.278 kb on + strand, within PP_0596at 695.297 kb on + strand, within PP_0596at 695.297 kb on + strand, within PP_0596at 695.298 kb on - strand, within PP_0596at 695.357 kb on + strand, within PP_0596at 695.358 kb on - strand, within PP_0596at 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.397 kb on + strandat 695.440 kb on + strandat 695.531 kb on + strandat 695.532 kb on - strandat 695.532 kb on - strandat 695.532 kb on - strandat 695.565 kb on + strandat 695.619 kb on - strandat 695.891 kb on + strand, within PP_0597at 696.054 kb on + strand, within PP_0597at 696.054 kb on + strand, within PP_0597at 696.054 kb on + strand, within PP_0597at 696.126 kb on + strand, within PP_0597at 696.126 kb on + strand, within PP_0597at 696.126 kb on + strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.270 kb on + strand, within PP_0597at 696.270 kb on + strand, within PP_0597at 696.271 kb on - strand, within PP_0597at 696.271 kb on - strand, within PP_0597at 696.276 kb on + strand, within PP_0597at 696.277 kb on - strand, within PP_0597at 696.277 kb on - strand, within PP_0597at 696.277 kb on - strand, within PP_0597at 696.307 kb on + strand, within PP_0597at 696.307 kb on + strand, within PP_0597at 696.308 kb on - strand, within PP_0597

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with 55.5 mM D-Glucose; pH 4.6
remove
693,276 - PP_0595 0.17 -1.5
693,276 - PP_0595 0.17 +0.5
693,291 - PP_0595 0.18 +0.3
693,291 - PP_0595 0.18 +0.9
693,297 + PP_0595 0.19 +0.4
693,297 + PP_0595 0.19 +0.6
693,297 + PP_0595 0.19 -0.0
693,298 - PP_0595 0.19 +0.7
693,299 + PP_0595 0.19 +0.3
693,299 + PP_0595 0.19 -0.4
693,299 + PP_0595 0.19 +0.5
693,299 + PP_0595 0.19 +1.1
693,299 + PP_0595 0.19 +0.1
693,299 + PP_0595 0.19 +0.5
693,300 - PP_0595 0.19 +0.6
693,309 + PP_0595 0.20 -2.9
693,371 + PP_0595 0.27 +1.2
693,372 - PP_0595 0.27 -1.7
693,372 - PP_0595 0.27 +0.0
693,464 + PP_0595 0.37 -1.1
693,525 - PP_0595 0.44 +0.2
693,678 + PP_0595 0.60 +0.0
693,679 - PP_0595 0.60 +0.6
693,679 - PP_0595 0.60 +1.4
693,809 + PP_0595 0.75 +0.2
693,810 - PP_0595 0.75 +0.1
693,810 - PP_0595 0.75 -0.2
693,931 + PP_0595 0.88 +0.3
693,978 - -2.5
693,978 - +0.4
694,042 + -0.1
694,042 + -0.0
694,043 - +0.0
694,043 - -0.3
694,070 - +0.7
694,094 + +0.0
694,111 - -1.0
694,137 - +1.3
694,230 - +0.3
694,230 - +1.0
694,289 + -1.1
694,290 - +0.3
694,290 - +0.2
694,403 - PP_0596 0.18 +0.3
694,412 + PP_0596 0.19 +0.2
694,412 + PP_0596 0.19 +0.3
694,505 + PP_0596 0.26 +0.4
694,505 + PP_0596 0.26 +0.6
694,505 + PP_0596 0.26 +0.3
694,505 + PP_0596 0.26 +0.9
694,506 - PP_0596 0.26 -0.2
694,506 - PP_0596 0.26 +0.1
694,507 + PP_0596 0.26 +0.4
694,559 + PP_0596 0.30 -0.0
694,560 - PP_0596 0.30 +0.1
694,616 + PP_0596 0.34 +0.4
694,617 - PP_0596 0.34 -1.2
694,639 + PP_0596 0.36 +1.1
694,716 + PP_0596 0.41 -0.3
694,716 + PP_0596 0.41 +0.8
694,716 + PP_0596 0.41 +0.6
694,716 + PP_0596 0.41 -1.3
694,716 + PP_0596 0.41 -0.2
694,717 - PP_0596 0.41 -2.1
694,717 - PP_0596 0.41 -1.2
694,881 - PP_0596 0.54 -0.9
695,079 - PP_0596 0.68 +0.6
695,111 + PP_0596 0.71 +0.0
695,112 - PP_0596 0.71 +0.2
695,136 - PP_0596 0.72 +1.1
695,136 - PP_0596 0.72 +1.3
695,141 + PP_0596 0.73 -0.3
695,142 - PP_0596 0.73 +0.5
695,142 - PP_0596 0.73 +0.0
695,278 + PP_0596 0.83 -0.3
695,297 + PP_0596 0.84 +1.4
695,297 + PP_0596 0.84 -0.3
695,298 - PP_0596 0.84 -0.7
695,357 + PP_0596 0.89 -1.2
695,358 - PP_0596 0.89 +3.3
695,393 + -0.4
695,393 + -0.7
695,393 + +0.8
695,393 + -0.4
695,393 + +0.5
695,393 + +0.1
695,393 + -0.2
695,394 - -0.6
695,394 - -0.4
695,394 - -0.7
695,397 + -2.2
695,440 + -1.6
695,531 + +1.1
695,532 - -0.5
695,532 - +0.4
695,532 - +0.2
695,565 + +0.3
695,619 - +0.3
695,891 + PP_0597 0.21 +0.9
696,054 + PP_0597 0.32 +0.5
696,054 + PP_0597 0.32 -0.4
696,054 + PP_0597 0.32 -0.4
696,126 + PP_0597 0.37 +0.1
696,126 + PP_0597 0.37 +0.7
696,126 + PP_0597 0.37 -0.2
696,127 - PP_0597 0.37 -1.3
696,127 - PP_0597 0.37 -0.3
696,127 - PP_0597 0.37 -0.1
696,127 - PP_0597 0.37 +0.5
696,270 + PP_0597 0.46 -0.4
696,270 + PP_0597 0.46 +1.0
696,271 - PP_0597 0.46 +0.5
696,271 - PP_0597 0.46 +0.2
696,276 + PP_0597 0.47 -0.8
696,277 - PP_0597 0.47 -0.3
696,277 - PP_0597 0.47 -0.6
696,277 - PP_0597 0.47 +0.3
696,307 + PP_0597 0.49 -0.1
696,307 + PP_0597 0.49 +0.2
696,308 - PP_0597 0.49 +2.2

Or see this region's nucleotide sequence