Strain Fitness in Pseudomonas putida KT2440 around PP_0531

Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0530 and PP_0531 are separated by 371 nucleotidesPP_0531 and PP_0532 are separated by 21 nucleotides PP_0530: PP_0530 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 615,651 to 616,301 _0530 PP_0531: PP_0531 - hypothetical protein, at 616,673 to 617,653 _0531 PP_0532: PP_0532 - conserved exported protein of unknown function, at 617,675 to 618,568 _0532 Position (kb) 616 617 618Strain fitness (log2 ratio) -2 -1 0 1 2at 615.730 kb on + strand, within PP_0530at 615.742 kb on + strand, within PP_0530at 615.742 kb on + strand, within PP_0530at 615.742 kb on + strand, within PP_0530at 615.742 kb on + strand, within PP_0530at 615.743 kb on - strand, within PP_0530at 615.744 kb on + strand, within PP_0530at 615.744 kb on + strand, within PP_0530at 615.744 kb on + strand, within PP_0530at 615.854 kb on + strand, within PP_0530at 615.924 kb on - strand, within PP_0530at 615.924 kb on - strand, within PP_0530at 616.001 kb on + strand, within PP_0530at 616.002 kb on - strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.163 kb on + strand, within PP_0530at 616.164 kb on - strand, within PP_0530at 616.164 kb on - strand, within PP_0530at 616.227 kb on + strand, within PP_0530at 616.228 kb on - strand, within PP_0530at 616.228 kb on - strand, within PP_0530at 616.405 kb on - strandat 616.501 kb on + strandat 616.501 kb on + strandat 616.501 kb on + strandat 616.501 kb on + strandat 616.501 kb on + strandat 616.501 kb on + strandat 616.501 kb on + strandat 616.502 kb on - strandat 616.502 kb on - strandat 616.502 kb on - strandat 616.530 kb on + strandat 616.530 kb on + strandat 616.531 kb on - strandat 616.531 kb on - strandat 616.531 kb on - strandat 616.568 kb on - strandat 616.571 kb on - strandat 616.571 kb on - strandat 616.571 kb on - strandat 616.594 kb on + strandat 616.594 kb on + strandat 616.594 kb on + strandat 616.595 kb on - strandat 616.603 kb on - strandat 616.628 kb on + strandat 616.629 kb on - strandat 616.685 kb on + strandat 616.760 kb on + strandat 616.761 kb on - strandat 616.761 kb on - strandat 616.826 kb on + strand, within PP_0531at 616.826 kb on + strand, within PP_0531at 616.827 kb on - strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.871 kb on + strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.872 kb on - strand, within PP_0531at 616.884 kb on - strand, within PP_0531at 616.953 kb on - strand, within PP_0531at 616.953 kb on - strand, within PP_0531at 617.003 kb on + strand, within PP_0531at 617.003 kb on + strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.004 kb on - strand, within PP_0531at 617.021 kb on + strand, within PP_0531at 617.022 kb on - strand, within PP_0531at 617.273 kb on - strand, within PP_0531at 617.273 kb on - strand, within PP_0531at 617.280 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.303 kb on + strand, within PP_0531at 617.304 kb on - strand, within PP_0531at 617.332 kb on + strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.333 kb on - strand, within PP_0531at 617.393 kb on + strand, within PP_0531at 617.480 kb on + strand, within PP_0531at 617.480 kb on + strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.481 kb on - strand, within PP_0531at 617.482 kb on + strand, within PP_0531at 617.482 kb on + strand, within PP_0531at 617.483 kb on - strand, within PP_0531at 617.483 kb on - strand, within PP_0531at 617.483 kb on - strand, within PP_0531at 617.489 kb on + strand, within PP_0531at 617.490 kb on - strand, within PP_0531at 617.627 kb on + strandat 617.628 kb on - strandat 617.628 kb on - strandat 617.639 kb on + strandat 617.640 kb on - strandat 617.640 kb on - strandat 617.976 kb on + strandat 617.977 kb on - strand, within PP_0532at 618.033 kb on + strand, within PP_0532at 618.033 kb on + strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.034 kb on - strand, within PP_0532at 618.199 kb on - strand, within PP_0532at 618.447 kb on + strand, within PP_0532at 618.447 kb on + strand, within PP_0532at 618.623 kb on - strandat 618.634 kb on - strandat 618.634 kb on - strandat 618.642 kb on + strandat 618.642 kb on + strandat 618.643 kb on - strandat 618.652 kb on + strandat 618.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with 55.5 mM D-Glucose; pH 4.6
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615,730 + PP_0530 0.12 +0.3
615,742 + PP_0530 0.14 -0.4
615,742 + PP_0530 0.14 +0.1
615,742 + PP_0530 0.14 +0.5
615,742 + PP_0530 0.14 +0.3
615,743 - PP_0530 0.14 +0.1
615,744 + PP_0530 0.14 -0.8
615,744 + PP_0530 0.14 +0.5
615,744 + PP_0530 0.14 +1.6
615,854 + PP_0530 0.31 -0.5
615,924 - PP_0530 0.42 +0.3
615,924 - PP_0530 0.42 +0.3
616,001 + PP_0530 0.54 +0.1
616,002 - PP_0530 0.54 +0.1
616,163 + PP_0530 0.79 -0.1
616,163 + PP_0530 0.79 -0.1
616,163 + PP_0530 0.79 +0.8
616,163 + PP_0530 0.79 -1.1
616,163 + PP_0530 0.79 +0.2
616,163 + PP_0530 0.79 -0.2
616,163 + PP_0530 0.79 +1.9
616,163 + PP_0530 0.79 -0.2
616,164 - PP_0530 0.79 +0.3
616,164 - PP_0530 0.79 -0.2
616,227 + PP_0530 0.88 -0.8
616,228 - PP_0530 0.89 -0.1
616,228 - PP_0530 0.89 +0.4
616,405 - -0.6
616,501 + +0.1
616,501 + -0.7
616,501 + -1.2
616,501 + +0.7
616,501 + +0.6
616,501 + -0.4
616,501 + -1.7
616,502 - +0.6
616,502 - -0.5
616,502 - +0.8
616,530 + -0.1
616,530 + -0.3
616,531 - -0.1
616,531 - -0.4
616,531 - +0.4
616,568 - -2.0
616,571 - +0.0
616,571 - -0.3
616,571 - +0.2
616,594 + +0.5
616,594 + +0.0
616,594 + -0.5
616,595 - +0.3
616,603 - -2.0
616,628 + -0.2
616,629 - -1.5
616,685 + +0.3
616,760 + -0.7
616,761 - +0.6
616,761 - +0.2
616,826 + PP_0531 0.16 +0.4
616,826 + PP_0531 0.16 +0.6
616,827 - PP_0531 0.16 +0.2
616,871 + PP_0531 0.20 -1.3
616,871 + PP_0531 0.20 +0.3
616,871 + PP_0531 0.20 -0.0
616,871 + PP_0531 0.20 +0.3
616,871 + PP_0531 0.20 +0.9
616,871 + PP_0531 0.20 -0.3
616,872 - PP_0531 0.20 +0.5
616,872 - PP_0531 0.20 +0.2
616,872 - PP_0531 0.20 +0.0
616,872 - PP_0531 0.20 -1.3
616,872 - PP_0531 0.20 +1.4
616,872 - PP_0531 0.20 +1.4
616,872 - PP_0531 0.20 +0.0
616,884 - PP_0531 0.22 +0.5
616,953 - PP_0531 0.29 +0.3
616,953 - PP_0531 0.29 +0.9
617,003 + PP_0531 0.34 +1.0
617,003 + PP_0531 0.34 +1.0
617,004 - PP_0531 0.34 +0.9
617,004 - PP_0531 0.34 +0.5
617,004 - PP_0531 0.34 +0.2
617,004 - PP_0531 0.34 +1.3
617,004 - PP_0531 0.34 -0.0
617,021 + PP_0531 0.35 +0.3
617,022 - PP_0531 0.36 +0.3
617,273 - PP_0531 0.61 +0.0
617,273 - PP_0531 0.61 -0.4
617,280 + PP_0531 0.62 +0.1
617,303 + PP_0531 0.64 -0.2
617,303 + PP_0531 0.64 -0.4
617,303 + PP_0531 0.64 -0.5
617,303 + PP_0531 0.64 -0.6
617,304 - PP_0531 0.64 +0.3
617,332 + PP_0531 0.67 -0.2
617,333 - PP_0531 0.67 +0.3
617,333 - PP_0531 0.67 -0.3
617,333 - PP_0531 0.67 +0.4
617,333 - PP_0531 0.67 +0.3
617,333 - PP_0531 0.67 +0.3
617,393 + PP_0531 0.73 +1.5
617,480 + PP_0531 0.82 +0.5
617,480 + PP_0531 0.82 -0.7
617,481 - PP_0531 0.82 +0.7
617,481 - PP_0531 0.82 +0.3
617,481 - PP_0531 0.82 -0.3
617,481 - PP_0531 0.82 +0.7
617,481 - PP_0531 0.82 +0.2
617,481 - PP_0531 0.82 +0.2
617,482 + PP_0531 0.82 +0.8
617,482 + PP_0531 0.82 -0.2
617,483 - PP_0531 0.83 -0.3
617,483 - PP_0531 0.83 -0.5
617,483 - PP_0531 0.83 +0.0
617,489 + PP_0531 0.83 -0.8
617,490 - PP_0531 0.83 +0.2
617,627 + -1.3
617,628 - +0.4
617,628 - -0.5
617,639 + -0.0
617,640 - -0.7
617,640 - +0.3
617,976 + -0.3
617,977 - PP_0532 0.34 -0.8
618,033 + PP_0532 0.40 -0.1
618,033 + PP_0532 0.40 +0.7
618,034 - PP_0532 0.40 -0.3
618,034 - PP_0532 0.40 +0.4
618,034 - PP_0532 0.40 +0.5
618,034 - PP_0532 0.40 -0.1
618,034 - PP_0532 0.40 -0.3
618,199 - PP_0532 0.59 -0.4
618,447 + PP_0532 0.86 -0.7
618,447 + PP_0532 0.86 +1.0
618,623 - -1.3
618,634 - -0.7
618,634 - -0.7
618,642 + +0.1
618,642 + -0.5
618,643 - +0.7
618,652 + +0.1
618,653 - +0.2

Or see this region's nucleotide sequence