Experiment: LB 0.1x with 55.5 mM D-Glucose; pH 4.6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0352 and PP_0353 are separated by 147 nucleotides PP_0353 and PP_0354 overlap by 4 nucleotides PP_0354 and PP_0355 are separated by 92 nucleotides PP_0355 and PP_0356 are separated by 46 nucleotides
PP_0352: PP_0352 - RNA polymerase sigma-70 factor, ECF subfamily, at 429,003 to 429,521
_0352
PP_0353: PP_0353 - Exonuclease, at 429,669 to 430,379
_0353
PP_0354: PP_0354 - CBS domain protein, at 430,376 to 432,313
_0354
PP_0355: PP_0355 - Response regulator, at 432,406 to 432,975
_0355
PP_0356: PP_0356 - malate synthase G, at 433,022 to 435,199
_0356
Position (kb) 430
431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 429.476 kb on - strand at 429.641 kb on + strand at 429.642 kb on - strand at 429.664 kb on + strand at 429.665 kb on - strand at 429.670 kb on + strand at 429.670 kb on + strand at 429.671 kb on - strand at 430.104 kb on + strand, within PP_0353 at 430.104 kb on + strand, within PP_0353 at 430.105 kb on - strand, within PP_0353 at 430.105 kb on - strand, within PP_0353 at 430.105 kb on - strand, within PP_0353 at 430.206 kb on + strand, within PP_0353 at 430.207 kb on - strand, within PP_0353 at 430.207 kb on - strand, within PP_0353 at 430.277 kb on + strand, within PP_0353 at 430.277 kb on + strand, within PP_0353 at 430.277 kb on + strand, within PP_0353 at 430.277 kb on + strand, within PP_0353 at 430.277 kb on + strand, within PP_0353 at 430.278 kb on - strand, within PP_0353 at 430.278 kb on - strand, within PP_0353 at 430.281 kb on + strand, within PP_0353 at 430.282 kb on - strand, within PP_0353 at 430.282 kb on - strand, within PP_0353 at 430.379 kb on + strand at 430.379 kb on + strand at 430.379 kb on + strand at 430.380 kb on - strand at 430.380 kb on - strand at 430.380 kb on - strand at 430.380 kb on - strand at 430.491 kb on + strand at 430.491 kb on + strand at 430.508 kb on + strand at 430.509 kb on - strand at 430.554 kb on + strand at 430.554 kb on + strand at 430.554 kb on + strand at 430.555 kb on - strand at 430.555 kb on - strand at 430.566 kb on + strand at 430.567 kb on - strand at 430.630 kb on + strand, within PP_0354 at 430.631 kb on - strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.643 kb on + strand, within PP_0354 at 430.644 kb on - strand, within PP_0354 at 430.906 kb on - strand, within PP_0354 at 431.064 kb on + strand, within PP_0354 at 431.064 kb on + strand, within PP_0354 at 431.201 kb on - strand, within PP_0354 at 431.260 kb on + strand, within PP_0354 at 431.261 kb on - strand, within PP_0354 at 431.261 kb on - strand, within PP_0354 at 431.261 kb on - strand, within PP_0354 at 431.278 kb on + strand, within PP_0354 at 431.278 kb on + strand, within PP_0354 at 431.279 kb on - strand, within PP_0354 at 431.279 kb on - strand, within PP_0354 at 431.279 kb on - strand, within PP_0354 at 431.279 kb on - strand, within PP_0354 at 431.330 kb on + strand, within PP_0354 at 431.330 kb on + strand, within PP_0354 at 431.330 kb on + strand, within PP_0354 at 431.331 kb on - strand, within PP_0354 at 431.331 kb on - strand, within PP_0354 at 431.331 kb on - strand, within PP_0354 at 431.391 kb on - strand, within PP_0354 at 431.391 kb on - strand, within PP_0354 at 431.497 kb on + strand, within PP_0354 at 431.498 kb on - strand, within PP_0354 at 431.498 kb on - strand, within PP_0354 at 431.553 kb on + strand, within PP_0354 at 431.553 kb on + strand, within PP_0354 at 431.602 kb on + strand, within PP_0354 at 431.602 kb on + strand, within PP_0354 at 431.603 kb on - strand, within PP_0354 at 431.603 kb on - strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.606 kb on + strand, within PP_0354 at 431.607 kb on - strand, within PP_0354 at 431.607 kb on - strand, within PP_0354 at 431.607 kb on - strand, within PP_0354 at 431.647 kb on + strand, within PP_0354 at 431.648 kb on - strand, within PP_0354 at 431.649 kb on - strand, within PP_0354 at 431.831 kb on + strand, within PP_0354 at 431.832 kb on - strand, within PP_0354 at 431.832 kb on - strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.105 kb on + strand, within PP_0354 at 432.106 kb on - strand, within PP_0354 at 432.106 kb on - strand, within PP_0354 at 432.159 kb on + strand at 432.160 kb on - strand at 432.160 kb on - strand at 432.344 kb on - strand at 432.345 kb on + strand at 432.345 kb on + strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.346 kb on - strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.347 kb on + strand at 432.348 kb on - strand at 432.348 kb on - strand at 432.348 kb on - strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.351 kb on + strand at 432.352 kb on - strand at 432.352 kb on - strand at 432.354 kb on - strand at 432.354 kb on - strand at 432.355 kb on + strand at 432.356 kb on - strand at 432.357 kb on + strand at 432.357 kb on + strand at 432.357 kb on + strand at 432.423 kb on + strand at 432.423 kb on + strand at 432.423 kb on + strand at 432.424 kb on - strand at 432.424 kb on - strand at 432.424 kb on - strand at 432.429 kb on + strand at 432.429 kb on + strand at 432.430 kb on - strand at 432.430 kb on - strand at 432.430 kb on - strand at 432.491 kb on + strand, within PP_0355 at 432.491 kb on + strand, within PP_0355 at 432.491 kb on + strand, within PP_0355 at 432.492 kb on - strand, within PP_0355 at 432.724 kb on + strand, within PP_0355 at 432.725 kb on - strand, within PP_0355 at 432.733 kb on + strand, within PP_0355 at 432.734 kb on - strand, within PP_0355 at 432.744 kb on + strand, within PP_0355 at 432.745 kb on - strand, within PP_0355 at 432.759 kb on + strand, within PP_0355 at 432.993 kb on - strand at 432.993 kb on - strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.023 kb on + strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.024 kb on - strand at 433.110 kb on - strand at 433.110 kb on - strand at 433.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.1x with 55.5 mM D-Glucose; pH 4.6 remove 429,476 - +0.7 429,641 + +0.9 429,642 - +0.3 429,664 + -0.5 429,665 - -0.1 429,670 + -1.0 429,670 + -0.9 429,671 - -0.4 430,104 + PP_0353 0.61 -0.1 430,104 + PP_0353 0.61 -0.3 430,105 - PP_0353 0.61 -0.8 430,105 - PP_0353 0.61 +0.1 430,105 - PP_0353 0.61 -0.9 430,206 + PP_0353 0.76 +0.5 430,207 - PP_0353 0.76 +0.6 430,207 - PP_0353 0.76 +0.5 430,277 + PP_0353 0.86 +0.3 430,277 + PP_0353 0.86 +0.1 430,277 + PP_0353 0.86 +0.1 430,277 + PP_0353 0.86 -1.0 430,277 + PP_0353 0.86 -2.8 430,278 - PP_0353 0.86 -2.6 430,278 - PP_0353 0.86 -2.2 430,281 + PP_0353 0.86 +0.5 430,282 - PP_0353 0.86 -1.5 430,282 - PP_0353 0.86 -0.4 430,379 + -1.1 430,379 + +0.3 430,379 + +0.1 430,380 - -1.8 430,380 - -1.7 430,380 - -0.4 430,380 - -0.2 430,491 + +2.8 430,491 + +0.5 430,508 + +0.3 430,509 - +1.5 430,554 + +0.2 430,554 + +0.2 430,554 + +0.1 430,555 - -0.0 430,555 - +0.2 430,566 + -0.8 430,567 - -0.7 430,630 + PP_0354 0.13 +0.3 430,631 - PP_0354 0.13 -0.7 430,643 + PP_0354 0.14 +0.8 430,643 + PP_0354 0.14 -0.2 430,643 + PP_0354 0.14 -0.5 430,643 + PP_0354 0.14 +1.0 430,643 + PP_0354 0.14 -0.1 430,643 + PP_0354 0.14 +1.0 430,643 + PP_0354 0.14 -0.4 430,643 + PP_0354 0.14 -0.1 430,644 - PP_0354 0.14 +0.2 430,906 - PP_0354 0.27 -0.1 431,064 + PP_0354 0.36 -0.2 431,064 + PP_0354 0.36 -0.8 431,201 - PP_0354 0.43 -0.2 431,260 + PP_0354 0.46 +1.2 431,261 - PP_0354 0.46 +0.8 431,261 - PP_0354 0.46 -0.5 431,261 - PP_0354 0.46 +3.2 431,278 + PP_0354 0.47 -0.0 431,278 + PP_0354 0.47 +0.8 431,279 - PP_0354 0.47 +0.5 431,279 - PP_0354 0.47 +0.3 431,279 - PP_0354 0.47 +0.6 431,279 - PP_0354 0.47 -0.9 431,330 + PP_0354 0.49 +1.3 431,330 + PP_0354 0.49 -0.5 431,330 + PP_0354 0.49 +0.3 431,331 - PP_0354 0.49 +0.3 431,331 - PP_0354 0.49 +0.6 431,331 - PP_0354 0.49 +0.1 431,391 - PP_0354 0.52 -0.9 431,391 - PP_0354 0.52 -0.0 431,497 + PP_0354 0.58 +0.2 431,498 - PP_0354 0.58 +0.8 431,498 - PP_0354 0.58 +0.2 431,553 + PP_0354 0.61 +0.1 431,553 + PP_0354 0.61 +0.3 431,602 + PP_0354 0.63 +0.3 431,602 + PP_0354 0.63 +0.3 431,603 - PP_0354 0.63 +0.3 431,603 - PP_0354 0.63 -0.9 431,606 + PP_0354 0.63 +0.6 431,606 + PP_0354 0.63 -0.5 431,606 + PP_0354 0.63 +1.3 431,606 + PP_0354 0.63 +0.2 431,606 + PP_0354 0.63 -0.1 431,607 - PP_0354 0.64 -0.7 431,607 - PP_0354 0.64 +0.3 431,607 - PP_0354 0.64 -1.7 431,647 + PP_0354 0.66 -0.7 431,648 - PP_0354 0.66 -0.3 431,649 - PP_0354 0.66 +0.3 431,831 + PP_0354 0.75 +0.3 431,832 - PP_0354 0.75 -0.7 431,832 - PP_0354 0.75 -0.0 432,105 + PP_0354 0.89 -1.5 432,105 + PP_0354 0.89 +0.2 432,105 + PP_0354 0.89 +0.1 432,106 - PP_0354 0.89 -1.5 432,106 - PP_0354 0.89 -0.6 432,159 + +0.3 432,160 - +0.3 432,160 - +0.3 432,344 - -0.3 432,345 + +0.5 432,345 + +1.0 432,346 - +0.2 432,346 - +0.7 432,346 - -1.7 432,346 - -0.2 432,347 + +0.4 432,347 + -0.4 432,347 + +0.3 432,347 + +1.1 432,348 - -0.1 432,348 - +0.3 432,348 - -0.8 432,351 + +0.8 432,351 + +0.9 432,351 + +0.7 432,351 + +0.4 432,352 - -1.0 432,352 - -0.7 432,354 - -0.2 432,354 - -0.3 432,355 + -0.1 432,356 - +0.3 432,357 + -0.3 432,357 + +0.9 432,357 + +0.4 432,423 + +0.3 432,423 + +0.5 432,423 + +0.6 432,424 - +0.1 432,424 - +1.2 432,424 - -0.1 432,429 + +0.2 432,429 + +0.8 432,430 - -0.4 432,430 - -1.2 432,430 - -1.2 432,491 + PP_0355 0.15 +1.8 432,491 + PP_0355 0.15 +1.3 432,491 + PP_0355 0.15 +0.8 432,492 - PP_0355 0.15 -0.2 432,724 + PP_0355 0.56 +0.8 432,725 - PP_0355 0.56 +0.1 432,733 + PP_0355 0.57 +0.6 432,734 - PP_0355 0.58 -0.2 432,744 + PP_0355 0.59 -0.5 432,745 - PP_0355 0.59 -0.2 432,759 + PP_0355 0.62 -0.3 432,993 - -2.2 432,993 - +0.2 433,023 + +0.3 433,023 + +0.5 433,023 + -0.4 433,023 + -3.2 433,023 + +0.1 433,023 + +0.4 433,024 - +0.7 433,024 - +1.0 433,024 - +0.3 433,024 - -1.1 433,110 - -1.7 433,110 - +0.9 433,171 - -0.2
Or see this region's nucleotide sequence