Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0758

Experiment: KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0757 and Psyr_0758 are separated by 80 nucleotidesPsyr_0758 and Psyr_0759 are separated by 17 nucleotides Psyr_0757: Psyr_0757 - transcriptional regulator, LacI family, at 862,009 to 863,001 _0757 Psyr_0758: Psyr_0758 - beta-fructofuranosidase, at 863,082 to 864,563 _0758 Psyr_0759: Psyr_0759 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 864,581 to 865,723 _0759 Position (kb) 863 864 865Strain fitness (log2 ratio) -2 -1 0 1 2 3at 863.035 kb on - strandat 863.035 kb on - strandat 863.043 kb on - strandat 863.078 kb on + strandat 863.083 kb on + strandat 863.283 kb on + strand, within Psyr_0758at 863.283 kb on + strand, within Psyr_0758at 863.283 kb on + strand, within Psyr_0758at 863.328 kb on - strand, within Psyr_0758at 863.350 kb on - strand, within Psyr_0758at 863.362 kb on + strand, within Psyr_0758at 863.362 kb on + strand, within Psyr_0758at 863.362 kb on + strand, within Psyr_0758at 863.363 kb on - strand, within Psyr_0758at 863.363 kb on - strand, within Psyr_0758at 863.363 kb on - strand, within Psyr_0758at 863.365 kb on + strand, within Psyr_0758at 863.365 kb on + strand, within Psyr_0758at 863.365 kb on + strand, within Psyr_0758at 863.478 kb on + strand, within Psyr_0758at 863.478 kb on + strand, within Psyr_0758at 863.478 kb on + strand, within Psyr_0758at 863.479 kb on - strand, within Psyr_0758at 863.479 kb on - strand, within Psyr_0758at 863.479 kb on - strand, within Psyr_0758at 863.479 kb on - strand, within Psyr_0758at 863.571 kb on + strand, within Psyr_0758at 863.572 kb on - strand, within Psyr_0758at 863.726 kb on - strand, within Psyr_0758at 863.726 kb on - strand, within Psyr_0758at 863.754 kb on - strand, within Psyr_0758at 863.754 kb on - strand, within Psyr_0758at 863.754 kb on - strand, within Psyr_0758at 863.863 kb on + strand, within Psyr_0758at 863.871 kb on + strand, within Psyr_0758at 863.871 kb on + strand, within Psyr_0758at 863.871 kb on + strand, within Psyr_0758at 863.872 kb on - strand, within Psyr_0758at 863.872 kb on - strand, within Psyr_0758at 863.872 kb on - strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.915 kb on + strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.916 kb on - strand, within Psyr_0758at 863.917 kb on + strand, within Psyr_0758at 863.917 kb on + strand, within Psyr_0758at 863.917 kb on + strand, within Psyr_0758at 863.917 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.947 kb on + strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 863.948 kb on - strand, within Psyr_0758at 864.173 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.204 kb on + strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.205 kb on - strand, within Psyr_0758at 864.217 kb on + strand, within Psyr_0758at 864.218 kb on - strand, within Psyr_0758at 864.218 kb on - strand, within Psyr_0758at 864.218 kb on - strand, within Psyr_0758at 864.355 kb on + strand, within Psyr_0758at 864.356 kb on - strand, within Psyr_0758at 864.356 kb on - strand, within Psyr_0758at 864.356 kb on - strand, within Psyr_0758at 864.394 kb on + strand, within Psyr_0758at 864.395 kb on - strand, within Psyr_0758at 864.395 kb on - strand, within Psyr_0758at 864.584 kb on + strandat 864.599 kb on + strandat 864.599 kb on + strandat 864.600 kb on - strandat 864.600 kb on - strandat 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.813 kb on + strand, within Psyr_0759at 864.813 kb on + strand, within Psyr_0759at 864.813 kb on + strand, within Psyr_0759at 865.062 kb on + strand, within Psyr_0759at 865.062 kb on + strand, within Psyr_0759at 865.062 kb on + strand, within Psyr_0759at 865.062 kb on + strand, within Psyr_0759at 865.063 kb on - strand, within Psyr_0759at 865.142 kb on + strand, within Psyr_0759at 865.142 kb on + strand, within Psyr_0759at 865.142 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.477 kb on - strand, within Psyr_0759

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
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863,035 - +0.5
863,035 - -0.4
863,043 - +0.5
863,078 + +0.3
863,083 + +0.0
863,283 + Psyr_0758 0.14 +0.3
863,283 + Psyr_0758 0.14 +0.8
863,283 + Psyr_0758 0.14 +1.5
863,328 - Psyr_0758 0.17 +1.2
863,350 - Psyr_0758 0.18 -0.1
863,362 + Psyr_0758 0.19 +0.3
863,362 + Psyr_0758 0.19 -0.7
863,362 + Psyr_0758 0.19 -1.8
863,363 - Psyr_0758 0.19 -0.6
863,363 - Psyr_0758 0.19 +1.4
863,363 - Psyr_0758 0.19 -0.4
863,365 + Psyr_0758 0.19 -0.9
863,365 + Psyr_0758 0.19 +0.8
863,365 + Psyr_0758 0.19 +0.4
863,478 + Psyr_0758 0.27 -0.9
863,478 + Psyr_0758 0.27 -0.4
863,478 + Psyr_0758 0.27 +0.1
863,479 - Psyr_0758 0.27 +1.2
863,479 - Psyr_0758 0.27 +0.2
863,479 - Psyr_0758 0.27 +0.0
863,479 - Psyr_0758 0.27 +0.2
863,571 + Psyr_0758 0.33 +0.3
863,572 - Psyr_0758 0.33 -0.1
863,726 - Psyr_0758 0.43 +0.4
863,726 - Psyr_0758 0.43 +1.1
863,754 - Psyr_0758 0.45 -1.1
863,754 - Psyr_0758 0.45 -0.2
863,754 - Psyr_0758 0.45 +0.6
863,863 + Psyr_0758 0.53 +0.3
863,871 + Psyr_0758 0.53 -0.2
863,871 + Psyr_0758 0.53 +0.2
863,871 + Psyr_0758 0.53 -0.2
863,872 - Psyr_0758 0.53 -0.2
863,872 - Psyr_0758 0.53 +0.6
863,872 - Psyr_0758 0.53 +0.1
863,915 + Psyr_0758 0.56 -0.3
863,915 + Psyr_0758 0.56 -0.1
863,915 + Psyr_0758 0.56 +1.1
863,915 + Psyr_0758 0.56 -0.0
863,915 + Psyr_0758 0.56 +0.6
863,915 + Psyr_0758 0.56 +1.2
863,915 + Psyr_0758 0.56 -0.7
863,915 + Psyr_0758 0.56 +1.2
863,915 + Psyr_0758 0.56 +1.4
863,915 + Psyr_0758 0.56 +0.0
863,915 + Psyr_0758 0.56 +1.2
863,915 + Psyr_0758 0.56 -0.4
863,915 + Psyr_0758 0.56 -0.1
863,915 + Psyr_0758 0.56 +0.5
863,915 + Psyr_0758 0.56 -0.9
863,916 - Psyr_0758 0.56 -0.1
863,916 - Psyr_0758 0.56 +0.5
863,916 - Psyr_0758 0.56 -0.2
863,916 - Psyr_0758 0.56 +0.6
863,916 - Psyr_0758 0.56 -0.9
863,916 - Psyr_0758 0.56 +0.5
863,916 - Psyr_0758 0.56 +2.2
863,916 - Psyr_0758 0.56 +0.6
863,916 - Psyr_0758 0.56 +0.5
863,916 - Psyr_0758 0.56 -0.6
863,916 - Psyr_0758 0.56 -0.8
863,916 - Psyr_0758 0.56 +1.0
863,916 - Psyr_0758 0.56 -1.6
863,916 - Psyr_0758 0.56 +0.5
863,916 - Psyr_0758 0.56 +1.3
863,916 - Psyr_0758 0.56 +0.2
863,916 - Psyr_0758 0.56 -0.2
863,917 + Psyr_0758 0.56 -0.9
863,917 + Psyr_0758 0.56 +0.4
863,917 + Psyr_0758 0.56 +0.4
863,917 + Psyr_0758 0.56 +0.3
863,947 + Psyr_0758 0.58 +0.9
863,947 + Psyr_0758 0.58 +0.2
863,947 + Psyr_0758 0.58 -1.2
863,947 + Psyr_0758 0.58 +0.2
863,947 + Psyr_0758 0.58 -0.3
863,947 + Psyr_0758 0.58 -0.5
863,947 + Psyr_0758 0.58 +0.1
863,947 + Psyr_0758 0.58 -0.5
863,947 + Psyr_0758 0.58 +0.7
863,947 + Psyr_0758 0.58 +1.1
863,947 + Psyr_0758 0.58 +1.0
863,947 + Psyr_0758 0.58 -0.1
863,947 + Psyr_0758 0.58 +0.5
863,947 + Psyr_0758 0.58 +0.5
863,947 + Psyr_0758 0.58 -0.7
863,947 + Psyr_0758 0.58 +1.5
863,948 - Psyr_0758 0.58 +0.4
863,948 - Psyr_0758 0.58 +1.2
863,948 - Psyr_0758 0.58 +1.2
863,948 - Psyr_0758 0.58 -2.2
863,948 - Psyr_0758 0.58 +1.1
863,948 - Psyr_0758 0.58 +0.3
863,948 - Psyr_0758 0.58 +0.5
863,948 - Psyr_0758 0.58 +0.1
863,948 - Psyr_0758 0.58 +0.1
863,948 - Psyr_0758 0.58 +0.2
863,948 - Psyr_0758 0.58 -1.2
863,948 - Psyr_0758 0.58 -1.4
863,948 - Psyr_0758 0.58 +0.6
863,948 - Psyr_0758 0.58 -0.1
863,948 - Psyr_0758 0.58 -2.0
863,948 - Psyr_0758 0.58 +1.2
863,948 - Psyr_0758 0.58 -0.0
863,948 - Psyr_0758 0.58 -0.8
863,948 - Psyr_0758 0.58 +0.2
863,948 - Psyr_0758 0.58 +1.2
863,948 - Psyr_0758 0.58 +0.7
863,948 - Psyr_0758 0.58 -0.1
863,948 - Psyr_0758 0.58 +0.7
864,173 + Psyr_0758 0.74 +0.4
864,204 + Psyr_0758 0.76 -0.2
864,204 + Psyr_0758 0.76 -1.5
864,204 + Psyr_0758 0.76 -1.1
864,204 + Psyr_0758 0.76 -0.4
864,204 + Psyr_0758 0.76 -0.1
864,204 + Psyr_0758 0.76 +0.4
864,204 + Psyr_0758 0.76 +0.5
864,204 + Psyr_0758 0.76 +0.0
864,204 + Psyr_0758 0.76 -0.3
864,204 + Psyr_0758 0.76 +0.2
864,204 + Psyr_0758 0.76 -0.1
864,204 + Psyr_0758 0.76 +0.2
864,204 + Psyr_0758 0.76 +0.1
864,204 + Psyr_0758 0.76 -0.0
864,204 + Psyr_0758 0.76 +0.4
864,205 - Psyr_0758 0.76 -0.1
864,205 - Psyr_0758 0.76 -0.3
864,205 - Psyr_0758 0.76 -0.2
864,205 - Psyr_0758 0.76 +2.2
864,205 - Psyr_0758 0.76 +1.8
864,205 - Psyr_0758 0.76 +0.2
864,205 - Psyr_0758 0.76 +0.3
864,205 - Psyr_0758 0.76 -0.5
864,205 - Psyr_0758 0.76 -0.2
864,205 - Psyr_0758 0.76 -0.5
864,205 - Psyr_0758 0.76 +0.4
864,205 - Psyr_0758 0.76 -0.5
864,205 - Psyr_0758 0.76 -1.4
864,205 - Psyr_0758 0.76 +0.7
864,205 - Psyr_0758 0.76 -2.3
864,205 - Psyr_0758 0.76 -0.0
864,205 - Psyr_0758 0.76 +1.2
864,205 - Psyr_0758 0.76 +1.2
864,217 + Psyr_0758 0.77 +1.5
864,218 - Psyr_0758 0.77 +0.3
864,218 - Psyr_0758 0.77 +0.3
864,218 - Psyr_0758 0.77 +0.2
864,355 + Psyr_0758 0.86 +0.1
864,356 - Psyr_0758 0.86 +0.2
864,356 - Psyr_0758 0.86 +0.1
864,356 - Psyr_0758 0.86 -0.1
864,394 + Psyr_0758 0.89 -0.2
864,395 - Psyr_0758 0.89 -1.1
864,395 - Psyr_0758 0.89 +0.2
864,584 + -0.2
864,599 + -0.2
864,599 + +0.8
864,600 - +2.5
864,600 - -0.4
864,795 + Psyr_0759 0.19 -0.0
864,795 + Psyr_0759 0.19 +0.4
864,795 + Psyr_0759 0.19 -0.1
864,795 + Psyr_0759 0.19 -0.1
864,795 + Psyr_0759 0.19 +0.9
864,795 + Psyr_0759 0.19 -0.4
864,795 + Psyr_0759 0.19 -0.0
864,795 + Psyr_0759 0.19 -1.4
864,795 + Psyr_0759 0.19 -0.3
864,795 + Psyr_0759 0.19 +0.0
864,795 + Psyr_0759 0.19 -1.4
864,795 + Psyr_0759 0.19 +0.9
864,796 - Psyr_0759 0.19 +0.1
864,796 - Psyr_0759 0.19 +0.2
864,796 - Psyr_0759 0.19 -0.8
864,796 - Psyr_0759 0.19 -0.4
864,796 - Psyr_0759 0.19 +3.3
864,813 + Psyr_0759 0.20 -0.4
864,813 + Psyr_0759 0.20 +0.5
864,813 + Psyr_0759 0.20 -0.1
865,062 + Psyr_0759 0.42 -0.2
865,062 + Psyr_0759 0.42 -1.5
865,062 + Psyr_0759 0.42 -0.5
865,062 + Psyr_0759 0.42 -0.7
865,063 - Psyr_0759 0.42 +0.2
865,142 + Psyr_0759 0.49 -0.6
865,142 + Psyr_0759 0.49 +0.5
865,142 + Psyr_0759 0.49 -0.0
865,161 + Psyr_0759 0.51 +0.3
865,161 + Psyr_0759 0.51 -0.6
865,161 + Psyr_0759 0.51 +0.6
865,161 + Psyr_0759 0.51 +0.0
865,161 + Psyr_0759 0.51 -0.4
865,161 + Psyr_0759 0.51 +0.3
865,161 + Psyr_0759 0.51 +0.8
865,162 - Psyr_0759 0.51 -0.1
865,162 - Psyr_0759 0.51 -0.6
865,162 - Psyr_0759 0.51 +0.7
865,162 - Psyr_0759 0.51 -2.5
865,162 - Psyr_0759 0.51 -0.0
865,162 - Psyr_0759 0.51 +0.2
865,477 - Psyr_0759 0.78 -0.5

Or see this region's nucleotide sequence