Strain Fitness in Escherichia coli BW25113 around b0861

Experiment: LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntartJ and artM are separated by 290 nucleotidesartM and artQ overlap by 1 nucleotidesartQ and artI are separated by 6 nucleotides b0860: artJ - arginine transporter subunit (NCBI), at 899,067 to 899,798 artJ b0861: artM - arginine transporter subunit (NCBI), at 900,089 to 900,757 artM b0862: artQ - arginine transporter subunit (NCBI), at 900,757 to 901,473 artQ b0863: artI - arginine transporter subunit (NCBI), at 901,480 to 902,211 artI Position (kb) 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 899.181 kb on + strand, within artJat 899.189 kb on - strand, within artJat 899.189 kb on - strand, within artJat 899.335 kb on + strand, within artJat 899.487 kb on - strand, within artJat 899.497 kb on + strand, within artJat 899.497 kb on + strand, within artJat 899.515 kb on - strand, within artJat 899.520 kb on - strand, within artJat 899.522 kb on + strand, within artJat 899.522 kb on + strand, within artJat 899.684 kb on + strand, within artJat 899.846 kb on - strandat 900.015 kb on + strandat 900.140 kb on - strandat 900.140 kb on - strandat 900.193 kb on + strand, within artMat 900.258 kb on - strand, within artMat 900.266 kb on - strand, within artMat 900.270 kb on - strand, within artMat 900.330 kb on - strand, within artMat 900.330 kb on - strand, within artMat 900.445 kb on + strand, within artMat 900.596 kb on - strand, within artMat 900.596 kb on - strand, within artMat 900.611 kb on - strand, within artMat 900.611 kb on - strand, within artMat 900.706 kb on + strandat 900.873 kb on + strand, within artQat 901.049 kb on + strand, within artQat 901.059 kb on + strand, within artQat 901.088 kb on + strand, within artQat 901.191 kb on + strand, within artQat 901.191 kb on + strand, within artQat 901.555 kb on - strand, within artIat 901.590 kb on - strand, within artIat 901.590 kb on - strand, within artIat 901.669 kb on - strand, within artIat 901.669 kb on - strand, within artI

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM
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899,181 + artJ b0860 0.16 -0.7
899,189 - artJ b0860 0.17 -1.0
899,189 - artJ b0860 0.17 -0.1
899,335 + artJ b0860 0.37 -0.5
899,487 - artJ b0860 0.57 -0.8
899,497 + artJ b0860 0.59 +0.2
899,497 + artJ b0860 0.59 -0.1
899,515 - artJ b0860 0.61 +1.1
899,520 - artJ b0860 0.62 -0.6
899,522 + artJ b0860 0.62 -0.0
899,522 + artJ b0860 0.62 +1.3
899,684 + artJ b0860 0.84 -0.7
899,846 - -0.3
900,015 + -2.2
900,140 - -0.7
900,140 - -0.1
900,193 + artM b0861 0.16 +0.6
900,258 - artM b0861 0.25 -0.8
900,266 - artM b0861 0.26 -0.1
900,270 - artM b0861 0.27 +0.4
900,330 - artM b0861 0.36 +0.5
900,330 - artM b0861 0.36 -0.4
900,445 + artM b0861 0.53 +0.4
900,596 - artM b0861 0.76 +2.3
900,596 - artM b0861 0.76 -0.8
900,611 - artM b0861 0.78 +1.1
900,611 - artM b0861 0.78 -0.7
900,706 + -0.4
900,873 + artQ b0862 0.16 -0.7
901,049 + artQ b0862 0.41 +0.5
901,059 + artQ b0862 0.42 +1.3
901,088 + artQ b0862 0.46 +0.8
901,191 + artQ b0862 0.61 +2.1
901,191 + artQ b0862 0.61 +2.6
901,555 - artI b0863 0.10 -0.1
901,590 - artI b0863 0.15 -0.3
901,590 - artI b0863 0.15 +1.1
901,669 - artI b0863 0.26 +0.8
901,669 - artI b0863 0.26 -0.4

Or see this region's nucleotide sequence