Strain Fitness in Pseudomonas putida KT2440 around PP_4578

Experiment: LB 0.1x with 55.5 mM D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4576 and PP_4577 overlap by 4 nucleotidesPP_4577 and PP_4578 are separated by 9 nucleotidesPP_4578 and PP_4579 are separated by 130 nucleotides PP_4576: PP_4576 - allophanate hydrolase subunit, at 5,195,825 to 5,196,514 _4576 PP_4577: PP_4577 - UPF0271 protein PP_4577, at 5,196,511 to 5,197,287 _4577 PP_4578: PP_4578 - Major facilitator family transporter, at 5,197,297 to 5,198,583 _4578 PP_4579: PP_4579 - Transcriptional regulator, LysR family, at 5,198,714 to 5,199,625 _4579 Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5196.355 kb on + strand, within PP_4576at 5196.355 kb on + strand, within PP_4576at 5196.355 kb on + strandat 5196.355 kb on + strand, within PP_4576at 5196.356 kb on - strand, within PP_4576at 5196.356 kb on - strand, within PP_4576at 5196.356 kb on - strand, within PP_4576at 5196.358 kb on + strand, within PP_4576at 5196.358 kb on + strand, within PP_4576at 5196.358 kb on + strand, within PP_4576at 5196.358 kb on + strand, within PP_4576at 5196.358 kb on + strand, within PP_4576at 5196.358 kb on + strand, within PP_4576at 5196.358 kb on + strand, within PP_4576at 5196.359 kb on - strand, within PP_4576at 5196.359 kb on - strand, within PP_4576at 5196.361 kb on - strand, within PP_4576at 5196.361 kb on - strand, within PP_4576at 5196.361 kb on - strand, within PP_4576at 5196.361 kb on - strand, within PP_4576at 5196.361 kb on - strand, within PP_4576at 5196.361 kb on - strand, within PP_4576at 5196.447 kb on + strandat 5196.468 kb on - strandat 5196.468 kb on - strandat 5196.740 kb on + strand, within PP_4577at 5196.740 kb on + strand, within PP_4577at 5196.740 kb on + strand, within PP_4577at 5196.741 kb on - strand, within PP_4577at 5196.914 kb on + strand, within PP_4577at 5196.914 kb on + strand, within PP_4577at 5196.914 kb on + strand, within PP_4577at 5196.938 kb on + strand, within PP_4577at 5196.938 kb on + strand, within PP_4577at 5196.939 kb on - strand, within PP_4577at 5196.939 kb on - strand, within PP_4577at 5196.939 kb on - strand, within PP_4577at 5196.939 kb on - strand, within PP_4577at 5196.992 kb on + strand, within PP_4577at 5197.083 kb on + strand, within PP_4577at 5197.178 kb on + strand, within PP_4577at 5197.178 kb on + strand, within PP_4577at 5197.179 kb on - strand, within PP_4577at 5197.179 kb on - strand, within PP_4577at 5197.246 kb on + strandat 5197.247 kb on - strandat 5197.287 kb on + strandat 5197.287 kb on + strandat 5197.287 kb on + strandat 5197.287 kb on + strandat 5197.288 kb on - strandat 5197.288 kb on - strandat 5197.288 kb on - strandat 5197.293 kb on + strandat 5197.293 kb on + strandat 5197.293 kb on + strandat 5197.294 kb on - strandat 5197.294 kb on - strandat 5197.364 kb on + strandat 5197.469 kb on + strand, within PP_4578at 5197.470 kb on - strand, within PP_4578at 5197.687 kb on + strand, within PP_4578at 5197.688 kb on - strand, within PP_4578at 5197.691 kb on + strand, within PP_4578at 5197.691 kb on + strand, within PP_4578at 5197.691 kb on + strand, within PP_4578at 5197.691 kb on + strand, within PP_4578at 5197.691 kb on + strand, within PP_4578at 5197.692 kb on - strand, within PP_4578at 5197.706 kb on + strand, within PP_4578at 5197.706 kb on + strand, within PP_4578at 5197.707 kb on - strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.715 kb on + strand, within PP_4578at 5197.716 kb on - strand, within PP_4578at 5197.716 kb on - strand, within PP_4578at 5197.716 kb on - strand, within PP_4578at 5197.742 kb on + strand, within PP_4578at 5197.742 kb on + strand, within PP_4578at 5197.742 kb on + strand, within PP_4578at 5197.743 kb on - strand, within PP_4578at 5197.743 kb on - strand, within PP_4578at 5197.814 kb on + strand, within PP_4578at 5197.814 kb on + strand, within PP_4578at 5197.814 kb on + strand, within PP_4578at 5197.815 kb on - strand, within PP_4578at 5197.817 kb on + strand, within PP_4578at 5197.892 kb on + strand, within PP_4578at 5197.940 kb on + strand, within PP_4578at 5197.940 kb on + strand, within PP_4578at 5198.060 kb on + strand, within PP_4578at 5198.228 kb on + strand, within PP_4578at 5198.229 kb on - strand, within PP_4578at 5198.229 kb on - strand, within PP_4578at 5198.293 kb on - strand, within PP_4578at 5198.341 kb on + strand, within PP_4578at 5198.342 kb on - strand, within PP_4578at 5198.342 kb on - strand, within PP_4578at 5198.418 kb on + strand, within PP_4578at 5198.419 kb on - strand, within PP_4578at 5198.490 kb on + strandat 5198.490 kb on + strandat 5198.550 kb on + strandat 5198.551 kb on - strandat 5198.603 kb on + strandat 5198.612 kb on - strandat 5198.905 kb on - strand, within PP_4579at 5198.905 kb on - strand, within PP_4579at 5198.905 kb on - strand, within PP_4579at 5198.913 kb on - strand, within PP_4579at 5199.007 kb on + strand, within PP_4579at 5199.007 kb on + strand, within PP_4579at 5199.008 kb on - strand, within PP_4579at 5199.008 kb on - strand, within PP_4579at 5199.139 kb on + strand, within PP_4579at 5199.139 kb on + strand, within PP_4579at 5199.139 kb on + strand, within PP_4579at 5199.140 kb on - strand, within PP_4579at 5199.140 kb on - strand, within PP_4579at 5199.140 kb on - strand, within PP_4579at 5199.245 kb on + strand, within PP_4579at 5199.245 kb on + strand, within PP_4579at 5199.246 kb on - strand, within PP_4579at 5199.246 kb on - strandat 5199.246 kb on - strand, within PP_4579

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.1x with 55.5 mM D-Glucose
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5,196,355 + PP_4576 0.77 -1.0
5,196,355 + PP_4576 0.77 -1.7
5,196,355 + -1.0
5,196,355 + PP_4576 0.77 -0.3
5,196,356 - PP_4576 0.77 -1.0
5,196,356 - PP_4576 0.77 -0.0
5,196,356 - PP_4576 0.77 +0.5
5,196,358 + PP_4576 0.77 +0.7
5,196,358 + PP_4576 0.77 -2.3
5,196,358 + PP_4576 0.77 -4.1
5,196,358 + PP_4576 0.77 -1.7
5,196,358 + PP_4576 0.77 -2.1
5,196,358 + PP_4576 0.77 -2.0
5,196,358 + PP_4576 0.77 -0.1
5,196,359 - PP_4576 0.77 -2.8
5,196,359 - PP_4576 0.77 +0.6
5,196,361 - PP_4576 0.78 -1.2
5,196,361 - PP_4576 0.78 -1.6
5,196,361 - PP_4576 0.78 -1.3
5,196,361 - PP_4576 0.78 -0.3
5,196,361 - PP_4576 0.78 -0.5
5,196,361 - PP_4576 0.78 -0.6
5,196,447 + -0.5
5,196,468 - -0.2
5,196,468 - -1.7
5,196,740 + PP_4577 0.29 -2.0
5,196,740 + PP_4577 0.29 +0.2
5,196,740 + PP_4577 0.29 +0.6
5,196,741 - PP_4577 0.30 -1.4
5,196,914 + PP_4577 0.52 +0.0
5,196,914 + PP_4577 0.52 -3.8
5,196,914 + PP_4577 0.52 -0.4
5,196,938 + PP_4577 0.55 +0.6
5,196,938 + PP_4577 0.55 -1.1
5,196,939 - PP_4577 0.55 +0.4
5,196,939 - PP_4577 0.55 -0.1
5,196,939 - PP_4577 0.55 -0.5
5,196,939 - PP_4577 0.55 -1.4
5,196,992 + PP_4577 0.62 -2.3
5,197,083 + PP_4577 0.74 -2.7
5,197,178 + PP_4577 0.86 -0.8
5,197,178 + PP_4577 0.86 +0.2
5,197,179 - PP_4577 0.86 -1.3
5,197,179 - PP_4577 0.86 -0.2
5,197,246 + -1.0
5,197,247 - -0.5
5,197,287 + +2.6
5,197,287 + +0.1
5,197,287 + +0.9
5,197,287 + -1.4
5,197,288 - +0.5
5,197,288 - +0.4
5,197,288 - -3.8
5,197,293 + -0.6
5,197,293 + +0.6
5,197,293 + -0.0
5,197,294 - -0.8
5,197,294 - +0.9
5,197,364 + -1.0
5,197,469 + PP_4578 0.13 -0.4
5,197,470 - PP_4578 0.13 -0.6
5,197,687 + PP_4578 0.30 -1.0
5,197,688 - PP_4578 0.30 -0.0
5,197,691 + PP_4578 0.31 +0.2
5,197,691 + PP_4578 0.31 +1.5
5,197,691 + PP_4578 0.31 +0.2
5,197,691 + PP_4578 0.31 -0.8
5,197,691 + PP_4578 0.31 +0.5
5,197,692 - PP_4578 0.31 -0.3
5,197,706 + PP_4578 0.32 -1.5
5,197,706 + PP_4578 0.32 +0.6
5,197,707 - PP_4578 0.32 -1.6
5,197,715 + PP_4578 0.32 -0.8
5,197,715 + PP_4578 0.32 -0.1
5,197,715 + PP_4578 0.32 +0.5
5,197,715 + PP_4578 0.32 +1.0
5,197,715 + PP_4578 0.32 +0.0
5,197,715 + PP_4578 0.32 -0.2
5,197,716 - PP_4578 0.33 -0.4
5,197,716 - PP_4578 0.33 -0.6
5,197,716 - PP_4578 0.33 -2.3
5,197,742 + PP_4578 0.35 +1.7
5,197,742 + PP_4578 0.35 +0.3
5,197,742 + PP_4578 0.35 +0.6
5,197,743 - PP_4578 0.35 -0.1
5,197,743 - PP_4578 0.35 +0.3
5,197,814 + PP_4578 0.40 -0.1
5,197,814 + PP_4578 0.40 +0.3
5,197,814 + PP_4578 0.40 -0.1
5,197,815 - PP_4578 0.40 -0.2
5,197,817 + PP_4578 0.40 +0.7
5,197,892 + PP_4578 0.46 -1.9
5,197,940 + PP_4578 0.50 -0.2
5,197,940 + PP_4578 0.50 -0.4
5,198,060 + PP_4578 0.59 -0.4
5,198,228 + PP_4578 0.72 -0.5
5,198,229 - PP_4578 0.72 -0.6
5,198,229 - PP_4578 0.72 -0.5
5,198,293 - PP_4578 0.77 -0.1
5,198,341 + PP_4578 0.81 +0.3
5,198,342 - PP_4578 0.81 -0.1
5,198,342 - PP_4578 0.81 -1.0
5,198,418 + PP_4578 0.87 -0.5
5,198,419 - PP_4578 0.87 +2.9
5,198,490 + -0.9
5,198,490 + -0.3
5,198,550 + -0.2
5,198,551 - -0.6
5,198,603 + -0.4
5,198,612 - +0.3
5,198,905 - PP_4579 0.21 -0.1
5,198,905 - PP_4579 0.21 +1.1
5,198,905 - PP_4579 0.21 -2.3
5,198,913 - PP_4579 0.22 +0.5
5,199,007 + PP_4579 0.32 +0.3
5,199,007 + PP_4579 0.32 -1.0
5,199,008 - PP_4579 0.32 +0.2
5,199,008 - PP_4579 0.32 +0.6
5,199,139 + PP_4579 0.47 +2.4
5,199,139 + PP_4579 0.47 -0.1
5,199,139 + PP_4579 0.47 -0.5
5,199,140 - PP_4579 0.47 +0.2
5,199,140 - PP_4579 0.47 -1.6
5,199,140 - PP_4579 0.47 -0.3
5,199,245 + PP_4579 0.58 +0.1
5,199,245 + PP_4579 0.58 +0.2
5,199,246 - PP_4579 0.58 +0.0
5,199,246 - -1.7
5,199,246 - PP_4579 0.58 +0.8

Or see this region's nucleotide sequence