Experiment: LB Anaerobic with Cefoxitin 0.000003125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliI and yliJ overlap by 4 nucleotides yliJ and dacC are separated by 246 nucleotides dacC and deoR are separated by 46 nucleotides deoR and ybjG are separated by 57 nucleotides
b0837: yliI - predicted dehydrogenase (NCBI), at 877,965 to 879,080
yliI
b0838: yliJ - putative transferase (VIMSS), at 879,077 to 879,703
yliJ
b0839: dacC - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI), at 879,950 to 881,152
dacC
b0840: deoR - DNA-binding transcriptional repressor (NCBI), at 881,199 to 881,957
deoR
b0841: ybjG - undecaprenyl pyrophosphate phosphatase (NCBI), at 882,015 to 882,611
ybjG
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 879.008 kb on + strand at 879.026 kb on + strand at 879.046 kb on - strand at 879.046 kb on - strand at 879.084 kb on - strand at 879.092 kb on + strand at 879.138 kb on - strand at 879.167 kb on + strand, within yliJ at 879.170 kb on - strand, within yliJ at 879.226 kb on - strand, within yliJ at 879.226 kb on - strand, within yliJ at 879.353 kb on - strand, within yliJ at 879.353 kb on - strand, within yliJ at 879.523 kb on - strand, within yliJ at 879.525 kb on - strand, within yliJ at 879.599 kb on - strand, within yliJ at 879.599 kb on - strand, within yliJ at 879.613 kb on - strand, within yliJ at 879.637 kb on + strand, within yliJ at 879.680 kb on + strand at 879.703 kb on + strand at 879.727 kb on + strand at 879.727 kb on + strand at 879.741 kb on - strand at 879.742 kb on - strand at 879.817 kb on - strand at 879.961 kb on - strand at 879.963 kb on + strand at 880.059 kb on - strand at 880.156 kb on + strand, within dacC at 880.170 kb on - strand, within dacC at 880.270 kb on - strand, within dacC at 880.298 kb on + strand, within dacC at 880.298 kb on + strand, within dacC at 880.306 kb on + strand, within dacC at 880.453 kb on + strand, within dacC at 880.472 kb on - strand, within dacC at 880.489 kb on + strand, within dacC at 880.524 kb on - strand, within dacC at 880.550 kb on + strand, within dacC at 880.550 kb on + strand, within dacC at 880.568 kb on + strand, within dacC at 880.676 kb on + strand, within dacC at 880.829 kb on + strand, within dacC at 880.829 kb on + strand, within dacC at 880.917 kb on + strand, within dacC at 880.917 kb on + strand, within dacC at 881.000 kb on + strand, within dacC at 881.094 kb on + strand at 881.094 kb on + strand at 881.146 kb on - strand at 881.159 kb on + strand at 881.228 kb on - strand at 881.283 kb on - strand, within deoR at 881.294 kb on - strand, within deoR at 881.371 kb on + strand, within deoR at 881.497 kb on + strand, within deoR at 881.588 kb on - strand, within deoR at 881.661 kb on - strand, within deoR at 881.765 kb on + strand, within deoR at 881.778 kb on - strand, within deoR at 881.778 kb on - strand, within deoR at 881.829 kb on + strand, within deoR at 881.878 kb on + strand, within deoR at 881.878 kb on + strand, within deoR at 881.902 kb on - strand at 881.906 kb on + strand at 881.906 kb on + strand at 881.957 kb on - strand at 881.957 kb on - strand at 882.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Cefoxitin 0.000003125 mM remove 879,008 + +0.1 879,026 + -0.6 879,046 - -1.3 879,046 - -0.2 879,084 - +0.2 879,092 + -0.5 879,138 - +0.2 879,167 + yliJ b0838 0.14 -0.4 879,170 - yliJ b0838 0.15 -0.6 879,226 - yliJ b0838 0.24 -0.6 879,226 - yliJ b0838 0.24 -0.2 879,353 - yliJ b0838 0.44 -1.5 879,353 - yliJ b0838 0.44 +2.2 879,523 - yliJ b0838 0.71 -0.3 879,525 - yliJ b0838 0.71 -1.1 879,599 - yliJ b0838 0.83 -0.2 879,599 - yliJ b0838 0.83 -0.1 879,613 - yliJ b0838 0.85 +0.1 879,637 + yliJ b0838 0.89 +1.5 879,680 + +0.3 879,703 + -0.7 879,727 + +0.9 879,727 + +0.9 879,741 - -0.2 879,742 - -0.8 879,817 - -1.9 879,961 - +1.5 879,963 + -0.7 880,059 - +1.5 880,156 + dacC b0839 0.17 +0.2 880,170 - dacC b0839 0.18 +2.9 880,270 - dacC b0839 0.27 +0.1 880,298 + dacC b0839 0.29 +0.0 880,298 + dacC b0839 0.29 +0.0 880,306 + dacC b0839 0.30 +0.6 880,453 + dacC b0839 0.42 +0.2 880,472 - dacC b0839 0.43 +0.7 880,489 + dacC b0839 0.45 -0.1 880,524 - dacC b0839 0.48 -0.3 880,550 + dacC b0839 0.50 +1.9 880,550 + dacC b0839 0.50 -1.2 880,568 + dacC b0839 0.51 +3.2 880,676 + dacC b0839 0.60 -0.1 880,829 + dacC b0839 0.73 +0.7 880,829 + dacC b0839 0.73 +1.3 880,917 + dacC b0839 0.80 -0.2 880,917 + dacC b0839 0.80 -0.5 881,000 + dacC b0839 0.87 -0.1 881,094 + -1.2 881,094 + -1.2 881,146 - +0.9 881,159 + +0.0 881,228 - +0.4 881,283 - deoR b0840 0.11 +2.9 881,294 - deoR b0840 0.13 +0.8 881,371 + deoR b0840 0.23 +1.1 881,497 + deoR b0840 0.39 +2.5 881,588 - deoR b0840 0.51 +0.0 881,661 - deoR b0840 0.61 +1.2 881,765 + deoR b0840 0.75 -1.1 881,778 - deoR b0840 0.76 +0.3 881,778 - deoR b0840 0.76 +0.9 881,829 + deoR b0840 0.83 +0.9 881,878 + deoR b0840 0.89 +0.9 881,878 + deoR b0840 0.89 -0.1 881,902 - +0.4 881,906 + +0.6 881,906 + -0.1 881,957 - +0.9 881,957 - +0.7 882,047 + -1.4
Or see this region's nucleotide sequence