Strain Fitness in Escherichia coli BW25113 around b2174

Experiment: LB Anaerobic with Mecillinam 0.0000078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiR and b2174 are separated by 38 nucleotidesb2174 and spr are separated by 411 nucleotides b2173: yeiR - predicted enzyme (NCBI), at 2,265,851 to 2,266,837 yeiR b2174: b2174 - orf, hypothetical protein (VIMSS), at 2,266,876 to 2,267,589 b2174 b2175: spr - predicted peptidase, outer membrane lipoprotein (NCBI), at 2,268,001 to 2,268,567 spr Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2265.889 kb on + strandat 2266.013 kb on + strand, within yeiRat 2266.036 kb on + strand, within yeiRat 2266.036 kb on + strand, within yeiRat 2266.075 kb on + strand, within yeiRat 2266.091 kb on - strand, within yeiRat 2266.182 kb on - strand, within yeiRat 2266.182 kb on - strand, within yeiRat 2266.191 kb on - strand, within yeiRat 2266.207 kb on + strand, within yeiRat 2266.223 kb on - strand, within yeiRat 2266.223 kb on - strand, within yeiRat 2266.421 kb on - strand, within yeiRat 2266.421 kb on - strand, within yeiRat 2266.461 kb on - strand, within yeiRat 2266.588 kb on - strand, within yeiRat 2266.651 kb on + strand, within yeiRat 2266.651 kb on + strand, within yeiRat 2266.666 kb on + strand, within yeiRat 2266.911 kb on - strandat 2266.965 kb on - strand, within b2174at 2266.965 kb on - strand, within b2174at 2267.048 kb on - strand, within b2174at 2267.073 kb on - strand, within b2174at 2267.090 kb on - strand, within b2174at 2267.090 kb on - strand, within b2174at 2267.171 kb on - strand, within b2174at 2267.174 kb on + strand, within b2174at 2267.185 kb on + strand, within b2174at 2267.185 kb on + strand, within b2174at 2267.185 kb on + strand, within b2174at 2267.185 kb on + strand, within b2174at 2267.231 kb on + strand, within b2174at 2267.231 kb on + strand, within b2174at 2267.323 kb on - strand, within b2174at 2267.428 kb on + strand, within b2174at 2267.457 kb on - strand, within b2174at 2267.490 kb on - strand, within b2174at 2267.496 kb on + strand, within b2174at 2267.496 kb on + strand, within b2174at 2267.496 kb on + strand, within b2174at 2267.497 kb on + strand, within b2174at 2267.515 kb on + strand, within b2174at 2267.515 kb on + strand, within b2174at 2267.522 kb on - strandat 2267.523 kb on - strandat 2267.535 kb on - strandat 2267.618 kb on + strandat 2267.628 kb on - strandat 2267.628 kb on - strandat 2267.638 kb on - strandat 2267.638 kb on - strandat 2267.644 kb on - strandat 2267.644 kb on - strandat 2267.645 kb on + strandat 2267.659 kb on - strandat 2267.659 kb on - strandat 2267.661 kb on - strandat 2267.793 kb on - strandat 2267.806 kb on - strandat 2267.817 kb on + strandat 2267.819 kb on - strandat 2267.853 kb on + strandat 2268.026 kb on + strandat 2268.026 kb on + strandat 2268.056 kb on + strandat 2268.058 kb on - strand, within sprat 2268.072 kb on - strand, within sprat 2268.142 kb on - strand, within sprat 2268.216 kb on + strand, within sprat 2268.216 kb on + strand, within sprat 2268.216 kb on + strand, within sprat 2268.306 kb on - strand, within sprat 2268.416 kb on - strand, within sprat 2268.468 kb on - strand, within sprat 2268.516 kb on + strandat 2268.516 kb on + strandat 2268.536 kb on - strandat 2268.574 kb on - strandat 2268.574 kb on - strandat 2268.579 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Mecillinam 0.0000078125 mM
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2,265,889 + +0.1
2,266,013 + yeiR b2173 0.16 +0.4
2,266,036 + yeiR b2173 0.19 +0.4
2,266,036 + yeiR b2173 0.19 +0.4
2,266,075 + yeiR b2173 0.23 +0.2
2,266,091 - yeiR b2173 0.24 -1.2
2,266,182 - yeiR b2173 0.34 +0.2
2,266,182 - yeiR b2173 0.34 -0.1
2,266,191 - yeiR b2173 0.34 +0.2
2,266,207 + yeiR b2173 0.36 +0.1
2,266,223 - yeiR b2173 0.38 -0.0
2,266,223 - yeiR b2173 0.38 +0.5
2,266,421 - yeiR b2173 0.58 -0.5
2,266,421 - yeiR b2173 0.58 -0.3
2,266,461 - yeiR b2173 0.62 +0.2
2,266,588 - yeiR b2173 0.75 -0.2
2,266,651 + yeiR b2173 0.81 -1.5
2,266,651 + yeiR b2173 0.81 -0.2
2,266,666 + yeiR b2173 0.83 +0.5
2,266,911 - +0.3
2,266,965 - b2174 b2174 0.12 -3.0
2,266,965 - b2174 b2174 0.12 +0.4
2,267,048 - b2174 b2174 0.24 +0.1
2,267,073 - b2174 b2174 0.28 -0.9
2,267,090 - b2174 b2174 0.30 -0.6
2,267,090 - b2174 b2174 0.30 +0.0
2,267,171 - b2174 b2174 0.41 +0.9
2,267,174 + b2174 b2174 0.42 +0.5
2,267,185 + b2174 b2174 0.43 -0.5
2,267,185 + b2174 b2174 0.43 -0.4
2,267,185 + b2174 b2174 0.43 -1.0
2,267,185 + b2174 b2174 0.43 +0.5
2,267,231 + b2174 b2174 0.50 -0.3
2,267,231 + b2174 b2174 0.50 -0.3
2,267,323 - b2174 b2174 0.63 +0.8
2,267,428 + b2174 b2174 0.77 +1.6
2,267,457 - b2174 b2174 0.81 -0.3
2,267,490 - b2174 b2174 0.86 -0.6
2,267,496 + b2174 b2174 0.87 -0.9
2,267,496 + b2174 b2174 0.87 -0.8
2,267,496 + b2174 b2174 0.87 -0.9
2,267,497 + b2174 b2174 0.87 -0.3
2,267,515 + b2174 b2174 0.89 -0.4
2,267,515 + b2174 b2174 0.89 -0.4
2,267,522 - +0.5
2,267,523 - +1.1
2,267,535 - -0.6
2,267,618 + -0.1
2,267,628 - -0.2
2,267,628 - +1.9
2,267,638 - -0.3
2,267,638 - -2.0
2,267,644 - +0.0
2,267,644 - -0.8
2,267,645 + +0.4
2,267,659 - -2.0
2,267,659 - +0.7
2,267,661 - +1.9
2,267,793 - -0.6
2,267,806 - -1.2
2,267,817 + +0.3
2,267,819 - -0.9
2,267,853 + +0.6
2,268,026 + -0.2
2,268,026 + -3.6
2,268,056 + -2.4
2,268,058 - spr b2175 0.10 -3.6
2,268,072 - spr b2175 0.13 -2.6
2,268,142 - spr b2175 0.25 -2.0
2,268,216 + spr b2175 0.38 -3.8
2,268,216 + spr b2175 0.38 -0.6
2,268,216 + spr b2175 0.38 -2.2
2,268,306 - spr b2175 0.54 -3.6
2,268,416 - spr b2175 0.73 -1.2
2,268,468 - spr b2175 0.82 -0.6
2,268,516 + -3.3
2,268,516 + -1.6
2,268,536 - +0.4
2,268,574 - +0.4
2,268,574 - +0.4
2,268,579 + -0.5

Or see this region's nucleotide sequence