Strain Fitness in Pseudomonas putida KT2440 around PP_4512

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4511 and PP_4512 are separated by 181 nucleotidesPP_4512 and PP_4513 are separated by 0 nucleotidesPP_4513 and PP_4514 are separated by 67 nucleotides PP_4511: PP_4511 - Transcriptional regulator, AraC family, at 5,124,259 to 5,125,026 _4511 PP_4512: PP_4512 - putative permease of the drug/metabolite transporter (DMT) superfamily, at 5,125,208 to 5,126,098 _4512 PP_4513: PP_4513 - conserved protein of unknown function, at 5,126,099 to 5,126,380 _4513 PP_4514: PP_4514 - putative esterase of the alpha-beta hydrolase superfamily, at 5,126,448 to 5,128,634 _4514 Position (kb) 5125 5126 5127Strain fitness (log2 ratio) -2 -1 0 1 2at 5124.315 kb on + strandat 5124.560 kb on + strand, within PP_4511at 5124.713 kb on - strand, within PP_4511at 5124.733 kb on - strand, within PP_4511at 5124.819 kb on + strand, within PP_4511at 5124.850 kb on + strand, within PP_4511at 5124.850 kb on + strand, within PP_4511at 5124.850 kb on + strand, within PP_4511at 5124.850 kb on + strand, within PP_4511at 5124.850 kb on + strand, within PP_4511at 5124.851 kb on - strand, within PP_4511at 5124.937 kb on + strand, within PP_4511at 5124.937 kb on + strand, within PP_4511at 5124.938 kb on - strand, within PP_4511at 5124.938 kb on - strand, within PP_4511at 5124.939 kb on + strand, within PP_4511at 5124.939 kb on + strand, within PP_4511at 5124.939 kb on + strand, within PP_4511at 5124.939 kb on + strand, within PP_4511at 5124.939 kb on + strand, within PP_4511at 5124.940 kb on - strand, within PP_4511at 5124.940 kb on - strand, within PP_4511at 5124.940 kb on - strand, within PP_4511at 5124.940 kb on - strand, within PP_4511at 5124.940 kb on - strand, within PP_4511at 5124.940 kb on - strand, within PP_4511at 5124.987 kb on + strandat 5124.987 kb on + strandat 5124.988 kb on - strandat 5125.107 kb on + strandat 5125.108 kb on - strandat 5125.108 kb on - strandat 5125.144 kb on + strandat 5125.144 kb on + strandat 5125.145 kb on - strandat 5125.184 kb on - strandat 5125.184 kb on - strandat 5125.483 kb on - strand, within PP_4512at 5125.483 kb on - strand, within PP_4512at 5125.558 kb on + strand, within PP_4512at 5125.608 kb on + strand, within PP_4512at 5125.609 kb on - strand, within PP_4512at 5125.738 kb on - strand, within PP_4512at 5125.946 kb on + strand, within PP_4512at 5125.947 kb on - strand, within PP_4512at 5125.951 kb on + strand, within PP_4512at 5125.952 kb on - strand, within PP_4512at 5126.162 kb on + strand, within PP_4513at 5126.163 kb on - strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.347 kb on - strand, within PP_4513at 5126.347 kb on - strand, within PP_4513at 5126.347 kb on - strand, within PP_4513at 5126.398 kb on + strandat 5126.399 kb on - strandat 5126.410 kb on + strandat 5126.410 kb on + strandat 5126.411 kb on - strandat 5126.411 kb on - strandat 5126.411 kb on - strandat 5126.412 kb on + strandat 5126.412 kb on + strandat 5126.412 kb on + strandat 5126.413 kb on - strandat 5126.413 kb on - strandat 5126.413 kb on - strandat 5126.413 kb on - strandat 5126.415 kb on + strandat 5126.415 kb on + strandat 5126.426 kb on - strandat 5126.426 kb on - strandat 5126.484 kb on - strandat 5126.579 kb on - strandat 5126.658 kb on + strandat 5126.658 kb on + strandat 5126.659 kb on - strandat 5126.670 kb on + strand, within PP_4514at 5126.671 kb on - strand, within PP_4514at 5126.671 kb on - strand, within PP_4514at 5127.005 kb on - strand, within PP_4514at 5127.005 kb on - strand, within PP_4514

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Per-strain Table

Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay
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5,124,315 + -0.4
5,124,560 + PP_4511 0.39 -0.8
5,124,713 - PP_4511 0.59 -1.3
5,124,733 - PP_4511 0.62 -1.0
5,124,819 + PP_4511 0.73 +1.4
5,124,850 + PP_4511 0.77 -0.6
5,124,850 + PP_4511 0.77 -0.6
5,124,850 + PP_4511 0.77 +2.0
5,124,850 + PP_4511 0.77 +0.7
5,124,850 + PP_4511 0.77 +1.0
5,124,851 - PP_4511 0.77 -0.4
5,124,937 + PP_4511 0.88 -0.4
5,124,937 + PP_4511 0.88 +1.0
5,124,938 - PP_4511 0.88 -1.0
5,124,938 - PP_4511 0.88 +1.4
5,124,939 + PP_4511 0.89 +0.0
5,124,939 + PP_4511 0.89 +1.8
5,124,939 + PP_4511 0.89 +0.4
5,124,939 + PP_4511 0.89 +0.3
5,124,939 + PP_4511 0.89 +0.4
5,124,940 - PP_4511 0.89 -0.8
5,124,940 - PP_4511 0.89 +0.0
5,124,940 - PP_4511 0.89 -1.1
5,124,940 - PP_4511 0.89 +1.2
5,124,940 - PP_4511 0.89 -0.2
5,124,940 - PP_4511 0.89 +0.0
5,124,987 + -1.4
5,124,987 + -2.1
5,124,988 - +2.6
5,125,107 + +0.7
5,125,108 - +0.6
5,125,108 - +0.7
5,125,144 + +0.7
5,125,144 + -0.2
5,125,145 - +1.3
5,125,184 - +1.0
5,125,184 - +1.4
5,125,483 - PP_4512 0.31 +0.5
5,125,483 - PP_4512 0.31 -0.7
5,125,558 + PP_4512 0.39 -1.3
5,125,608 + PP_4512 0.45 -0.6
5,125,609 - PP_4512 0.45 +0.0
5,125,738 - PP_4512 0.59 -1.7
5,125,946 + PP_4512 0.83 -2.0
5,125,947 - PP_4512 0.83 -1.3
5,125,951 + PP_4512 0.83 +0.0
5,125,952 - PP_4512 0.84 -0.1
5,126,162 + PP_4513 0.22 +0.0
5,126,163 - PP_4513 0.23 +0.5
5,126,346 + PP_4513 0.88 +0.4
5,126,346 + PP_4513 0.88 -0.7
5,126,346 + PP_4513 0.88 -1.0
5,126,346 + PP_4513 0.88 +0.0
5,126,346 + PP_4513 0.88 -1.4
5,126,346 + PP_4513 0.88 +1.0
5,126,347 - PP_4513 0.88 +0.2
5,126,347 - PP_4513 0.88 -1.3
5,126,347 - PP_4513 0.88 -0.1
5,126,398 + -0.5
5,126,399 - -0.8
5,126,410 + +2.6
5,126,410 + +1.0
5,126,411 - -0.2
5,126,411 - +0.3
5,126,411 - +1.0
5,126,412 + +0.4
5,126,412 + +0.2
5,126,412 + +1.0
5,126,413 - -0.6
5,126,413 - -0.7
5,126,413 - -0.6
5,126,413 - -0.3
5,126,415 + +1.0
5,126,415 + -1.0
5,126,426 - -1.0
5,126,426 - -2.3
5,126,484 - +1.0
5,126,579 - +1.0
5,126,658 + -0.1
5,126,658 + -0.6
5,126,659 - +0.4
5,126,670 + PP_4514 0.10 -0.3
5,126,671 - PP_4514 0.10 +0.3
5,126,671 - PP_4514 0.10 +0.0
5,127,005 - PP_4514 0.25 -1.4
5,127,005 - PP_4514 0.25 -1.3

Or see this region's nucleotide sequence