Strain Fitness in Escherichia coli BW25113 around b4059

Experiment: LB Anaerobic with Furaltadone 0.00000390625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuvrA and ssb are separated by 253 nucleotidesssb and yjcB are separated by 98 nucleotidesyjcB and yjcC are separated by 429 nucleotides b4058: uvrA - excinuclease ABC subunit A (NCBI), at 4,269,072 to 4,271,894 uvrA b4059: ssb - single-strand DNA-binding protein (NCBI), at 4,272,148 to 4,272,684 ssb b4060: yjcB - orf, hypothetical protein (VIMSS), at 4,272,783 to 4,273,064 yjcB b4061: yjcC - predicted signal transduction protein (EAL domain containing protein) (NCBI), at 4,273,494 to 4,275,080 yjcC Position (kb) 4272 4273Strain fitness (log2 ratio) -2 -1 0 1at 4271.260 kb on + strand, within uvrAat 4271.260 kb on + strand, within uvrAat 4271.270 kb on + strand, within uvrAat 4271.270 kb on + strand, within uvrAat 4271.270 kb on - strand, within uvrAat 4271.370 kb on + strand, within uvrAat 4271.371 kb on - strand, within uvrAat 4271.371 kb on - strand, within uvrAat 4271.376 kb on + strand, within uvrAat 4271.376 kb on + strand, within uvrAat 4271.378 kb on - strand, within uvrAat 4271.378 kb on - strand, within uvrAat 4271.409 kb on - strand, within uvrAat 4271.497 kb on - strand, within uvrAat 4271.497 kb on - strand, within uvrAat 4271.536 kb on - strand, within uvrAat 4271.596 kb on + strand, within uvrAat 4271.606 kb on - strand, within uvrAat 4271.615 kb on + strandat 4271.696 kb on - strandat 4271.737 kb on + strandat 4271.763 kb on - strandat 4271.764 kb on - strandat 4271.855 kb on + strandat 4271.936 kb on - strandat 4272.030 kb on - strandat 4272.030 kb on - strandat 4272.064 kb on + strandat 4272.105 kb on + strandat 4272.105 kb on + strandat 4272.786 kb on + strandat 4272.786 kb on + strandat 4272.840 kb on - strand, within yjcBat 4272.840 kb on - strand, within yjcBat 4272.847 kb on + strand, within yjcBat 4272.847 kb on + strand, within yjcBat 4272.850 kb on - strand, within yjcBat 4272.865 kb on - strand, within yjcBat 4272.865 kb on - strand, within yjcBat 4272.896 kb on - strand, within yjcBat 4272.906 kb on + strand, within yjcBat 4272.906 kb on + strand, within yjcBat 4272.956 kb on + strand, within yjcBat 4272.991 kb on - strand, within yjcBat 4273.022 kb on - strand, within yjcBat 4273.063 kb on - strandat 4273.092 kb on + strandat 4273.092 kb on + strandat 4273.092 kb on + strandat 4273.100 kb on - strandat 4273.127 kb on + strandat 4273.127 kb on + strandat 4273.133 kb on - strandat 4273.133 kb on - strandat 4273.280 kb on + strandat 4273.294 kb on - strandat 4273.294 kb on - strandat 4273.381 kb on + strandat 4273.381 kb on + strandat 4273.404 kb on + strandat 4273.436 kb on + strandat 4273.439 kb on - strandat 4273.439 kb on - strandat 4273.443 kb on + strandat 4273.451 kb on + strandat 4273.459 kb on - strandat 4273.459 kb on - strandat 4273.461 kb on + strandat 4273.462 kb on + strandat 4273.462 kb on + strandat 4273.466 kb on + strandat 4273.474 kb on - strandat 4273.474 kb on - strandat 4273.496 kb on + strandat 4273.496 kb on + strandat 4273.498 kb on + strandat 4273.498 kb on - strandat 4273.499 kb on - strandat 4273.501 kb on + strandat 4273.502 kb on + strandat 4273.502 kb on + strandat 4273.504 kb on + strandat 4273.511 kb on + strandat 4273.579 kb on - strandat 4273.597 kb on + strandat 4273.616 kb on + strandat 4273.624 kb on - strandat 4273.627 kb on + strandat 4273.627 kb on + strandat 4273.641 kb on + strandat 4273.672 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.674 kb on + strand, within yjcCat 4273.682 kb on - strand, within yjcCat 4273.682 kb on - strand, within yjcC

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.00000390625 mM
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4,271,260 + uvrA b4058 0.78 -1.0
4,271,260 + uvrA b4058 0.78 -1.3
4,271,270 + uvrA b4058 0.78 +0.4
4,271,270 + uvrA b4058 0.78 -1.0
4,271,270 - uvrA b4058 0.78 -1.6
4,271,370 + uvrA b4058 0.81 -1.4
4,271,371 - uvrA b4058 0.81 -1.7
4,271,371 - uvrA b4058 0.81 -2.4
4,271,376 + uvrA b4058 0.82 -0.9
4,271,376 + uvrA b4058 0.82 -1.4
4,271,378 - uvrA b4058 0.82 -2.2
4,271,378 - uvrA b4058 0.82 -2.2
4,271,409 - uvrA b4058 0.83 -0.8
4,271,497 - uvrA b4058 0.86 -0.7
4,271,497 - uvrA b4058 0.86 -1.5
4,271,536 - uvrA b4058 0.87 -1.7
4,271,596 + uvrA b4058 0.89 -2.1
4,271,606 - uvrA b4058 0.90 -1.3
4,271,615 + -2.4
4,271,696 - -1.3
4,271,737 + -0.8
4,271,763 - -1.0
4,271,764 - -2.7
4,271,855 + -1.7
4,271,936 - -0.2
4,272,030 - -0.7
4,272,030 - -0.0
4,272,064 + +0.4
4,272,105 + -0.5
4,272,105 + +1.4
4,272,786 + -0.2
4,272,786 + +0.2
4,272,840 - yjcB b4060 0.20 +0.4
4,272,840 - yjcB b4060 0.20 -1.8
4,272,847 + yjcB b4060 0.23 -0.7
4,272,847 + yjcB b4060 0.23 -0.1
4,272,850 - yjcB b4060 0.24 +0.6
4,272,865 - yjcB b4060 0.29 -0.4
4,272,865 - yjcB b4060 0.29 +0.3
4,272,896 - yjcB b4060 0.40 +0.7
4,272,906 + yjcB b4060 0.44 -0.6
4,272,906 + yjcB b4060 0.44 +0.2
4,272,956 + yjcB b4060 0.61 +1.6
4,272,991 - yjcB b4060 0.74 -2.2
4,273,022 - yjcB b4060 0.85 +0.3
4,273,063 - +0.2
4,273,092 + -0.2
4,273,092 + +1.2
4,273,092 + +0.5
4,273,100 - -0.0
4,273,127 + +0.1
4,273,127 + +0.7
4,273,133 - +0.3
4,273,133 - +0.1
4,273,280 + -0.2
4,273,294 - +0.5
4,273,294 - -0.6
4,273,381 + -2.6
4,273,381 + +0.2
4,273,404 + -0.1
4,273,436 + -0.4
4,273,439 - +0.1
4,273,439 - +0.8
4,273,443 + -0.2
4,273,451 + +0.4
4,273,459 - -1.2
4,273,459 - -0.2
4,273,461 + +1.2
4,273,462 + -0.2
4,273,462 + -1.7
4,273,466 + -0.4
4,273,474 - +0.8
4,273,474 - +0.8
4,273,496 + -0.7
4,273,496 + +1.0
4,273,498 + +0.5
4,273,498 - -0.6
4,273,499 - -1.2
4,273,501 + +1.1
4,273,502 + +0.5
4,273,502 + +0.1
4,273,504 + +0.0
4,273,511 + +0.5
4,273,579 - -1.7
4,273,597 + -0.1
4,273,616 + +0.4
4,273,624 - -0.7
4,273,627 + +1.0
4,273,627 + -1.7
4,273,641 + +0.4
4,273,672 + yjcC b4061 0.11 +0.7
4,273,674 + yjcC b4061 0.11 +0.8
4,273,674 + yjcC b4061 0.11 -0.1
4,273,674 + yjcC b4061 0.11 +0.7
4,273,674 + yjcC b4061 0.11 -0.2
4,273,674 + yjcC b4061 0.11 -0.3
4,273,674 + yjcC b4061 0.11 +1.0
4,273,674 + yjcC b4061 0.11 +0.0
4,273,674 + yjcC b4061 0.11 -0.7
4,273,682 - yjcC b4061 0.12 +0.8
4,273,682 - yjcC b4061 0.12 -0.2

Or see this region's nucleotide sequence