Experiment: LB Anaerobic with Furaltadone 0.000015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiL and yjiM are separated by 9 nucleotides yjiM and yjiN are separated by 115 nucleotides
b4334: yjiL - putative enzyme (VIMSS), at 4,561,945 to 4,562,712
yjiL
b4335: yjiM - orf, hypothetical protein (VIMSS), at 4,562,722 to 4,563,873
yjiM
b4336: yjiN - conserved inner membrane protein (NCBI), at 4,563,989 to 4,565,269
yjiN
Position (kb)
4562
4563
4564 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4561.726 kb on + strand at 4561.727 kb on - strand at 4561.727 kb on - strand at 4561.727 kb on - strand at 4561.765 kb on + strand at 4561.765 kb on + strand at 4561.771 kb on + strand at 4561.771 kb on + strand at 4561.773 kb on - strand at 4561.773 kb on - strand at 4561.773 kb on - strand at 4561.773 kb on - strand at 4561.773 kb on - strand at 4561.782 kb on - strand at 4561.782 kb on - strand at 4561.783 kb on + strand at 4561.797 kb on + strand at 4561.808 kb on - strand at 4561.810 kb on + strand at 4561.813 kb on - strand at 4561.813 kb on - strand at 4561.822 kb on + strand at 4561.883 kb on - strand at 4561.958 kb on - strand at 4561.959 kb on - strand at 4561.959 kb on - strand at 4561.970 kb on - strand at 4561.987 kb on + strand at 4561.987 kb on + strand at 4561.991 kb on - strand at 4562.022 kb on + strand, within yjiL at 4562.092 kb on - strand, within yjiL at 4562.105 kb on + strand, within yjiL at 4562.105 kb on + strand, within yjiL at 4562.145 kb on - strand, within yjiL at 4562.160 kb on + strand, within yjiL at 4562.160 kb on + strand, within yjiL at 4562.205 kb on - strand, within yjiL at 4562.265 kb on + strand, within yjiL at 4562.265 kb on + strand, within yjiL at 4562.385 kb on - strand, within yjiL at 4562.385 kb on - strand, within yjiL at 4562.517 kb on + strand, within yjiL at 4562.517 kb on + strand, within yjiL at 4562.536 kb on - strand, within yjiL at 4562.662 kb on - strand at 4562.748 kb on + strand at 4562.753 kb on + strand at 4562.753 kb on + strand at 4562.758 kb on + strand at 4562.761 kb on - strand at 4562.818 kb on - strand at 4562.871 kb on - strand, within yjiM at 4562.919 kb on + strand, within yjiM at 4562.919 kb on + strand, within yjiM at 4562.919 kb on + strand, within yjiM at 4563.001 kb on + strand, within yjiM at 4563.028 kb on + strand, within yjiM at 4563.231 kb on + strand, within yjiM at 4563.453 kb on + strand, within yjiM at 4563.453 kb on + strand, within yjiM at 4563.466 kb on - strand, within yjiM at 4563.466 kb on - strand, within yjiM at 4563.506 kb on + strand, within yjiM at 4563.506 kb on + strand, within yjiM at 4563.514 kb on - strand, within yjiM at 4563.565 kb on - strand, within yjiM at 4563.568 kb on + strand, within yjiM at 4563.568 kb on + strand, within yjiM at 4563.692 kb on - strand, within yjiM at 4563.715 kb on - strand, within yjiM at 4563.715 kb on - strand, within yjiM at 4563.769 kb on - strand at 4563.818 kb on - strand at 4563.883 kb on + strand at 4563.968 kb on - strand at 4564.011 kb on - strand at 4564.138 kb on + strand, within yjiN at 4564.138 kb on + strand, within yjiN at 4564.205 kb on + strand, within yjiN at 4564.205 kb on + strand, within yjiN at 4564.222 kb on - strand, within yjiN at 4564.364 kb on - strand, within yjiN at 4564.466 kb on + strand, within yjiN at 4564.468 kb on + strand, within yjiN at 4564.468 kb on + strand, within yjiN at 4564.470 kb on + strand, within yjiN at 4564.566 kb on + strand, within yjiN at 4564.574 kb on - strand, within yjiN at 4564.579 kb on - strand, within yjiN at 4564.607 kb on + strand, within yjiN at 4564.650 kb on + strand, within yjiN at 4564.650 kb on + strand, within yjiN at 4564.682 kb on - strand, within yjiN at 4564.720 kb on + strand, within yjiN at 4564.740 kb on + strand, within yjiN
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Furaltadone 0.000015625 mM remove 4,561,726 + -1.0 4,561,727 - -0.4 4,561,727 - -0.1 4,561,727 - -0.1 4,561,765 + +0.2 4,561,765 + +0.1 4,561,771 + +0.7 4,561,771 + +0.6 4,561,773 - -1.4 4,561,773 - -0.1 4,561,773 - -0.3 4,561,773 - -0.4 4,561,773 - +0.7 4,561,782 - -0.2 4,561,782 - -0.8 4,561,783 + -0.2 4,561,797 + -0.0 4,561,808 - -0.8 4,561,810 + -0.0 4,561,813 - +0.3 4,561,813 - +1.2 4,561,822 + -0.5 4,561,883 - -0.7 4,561,958 - -0.1 4,561,959 - +0.2 4,561,959 - -0.4 4,561,970 - +1.7 4,561,987 + +0.6 4,561,987 + +0.2 4,561,991 - +0.4 4,562,022 + yjiL b4334 0.10 +0.7 4,562,092 - yjiL b4334 0.19 +0.1 4,562,105 + yjiL b4334 0.21 +0.9 4,562,105 + yjiL b4334 0.21 -0.5 4,562,145 - yjiL b4334 0.26 -0.4 4,562,160 + yjiL b4334 0.28 -1.8 4,562,160 + yjiL b4334 0.28 +0.4 4,562,205 - yjiL b4334 0.34 +0.1 4,562,265 + yjiL b4334 0.42 +0.4 4,562,265 + yjiL b4334 0.42 -0.8 4,562,385 - yjiL b4334 0.57 +0.1 4,562,385 - yjiL b4334 0.57 -0.4 4,562,517 + yjiL b4334 0.74 -0.3 4,562,517 + yjiL b4334 0.74 +0.6 4,562,536 - yjiL b4334 0.77 +0.0 4,562,662 - -0.9 4,562,748 + -0.3 4,562,753 + -0.3 4,562,753 + -0.2 4,562,758 + +0.3 4,562,761 - -2.1 4,562,818 - -0.3 4,562,871 - yjiM b4335 0.13 +0.1 4,562,919 + yjiM b4335 0.17 +1.3 4,562,919 + yjiM b4335 0.17 -1.4 4,562,919 + yjiM b4335 0.17 -0.1 4,563,001 + yjiM b4335 0.24 -0.6 4,563,028 + yjiM b4335 0.27 +0.6 4,563,231 + yjiM b4335 0.44 -0.0 4,563,453 + yjiM b4335 0.63 +1.0 4,563,453 + yjiM b4335 0.63 +1.0 4,563,466 - yjiM b4335 0.65 -0.4 4,563,466 - yjiM b4335 0.65 +1.5 4,563,506 + yjiM b4335 0.68 +1.0 4,563,506 + yjiM b4335 0.68 -1.0 4,563,514 - yjiM b4335 0.69 -0.1 4,563,565 - yjiM b4335 0.73 +0.4 4,563,568 + yjiM b4335 0.73 -2.0 4,563,568 + yjiM b4335 0.73 +2.5 4,563,692 - yjiM b4335 0.84 +0.3 4,563,715 - yjiM b4335 0.86 -1.5 4,563,715 - yjiM b4335 0.86 -0.1 4,563,769 - +0.9 4,563,818 - -0.2 4,563,883 + -0.1 4,563,968 - +0.9 4,564,011 - +0.3 4,564,138 + yjiN b4336 0.12 +1.0 4,564,138 + yjiN b4336 0.12 +0.9 4,564,205 + yjiN b4336 0.17 -0.1 4,564,205 + yjiN b4336 0.17 +3.2 4,564,222 - yjiN b4336 0.18 +0.2 4,564,364 - yjiN b4336 0.29 +1.4 4,564,466 + yjiN b4336 0.37 -0.1 4,564,468 + yjiN b4336 0.37 +0.2 4,564,468 + yjiN b4336 0.37 +0.9 4,564,470 + yjiN b4336 0.38 -0.6 4,564,566 + yjiN b4336 0.45 +0.9 4,564,574 - yjiN b4336 0.46 +1.4 4,564,579 - yjiN b4336 0.46 +0.9 4,564,607 + yjiN b4336 0.48 +0.1 4,564,650 + yjiN b4336 0.52 -1.4 4,564,650 + yjiN b4336 0.52 -0.1 4,564,682 - yjiN b4336 0.54 -0.6 4,564,720 + yjiN b4336 0.57 -0.2 4,564,740 + yjiN b4336 0.59 +0.2
Or see this region's nucleotide sequence