Experiment: KB with Sinomenine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4715 and Psyr_4716 are separated by 50 nucleotides Psyr_4716 and Psyr_4717 are separated by 277 nucleotides
Psyr_4715: Psyr_4715 - Sarcosine oxidase, alpha subunit, heterotetrameric, at 5,586,261 to 5,589,281
_4715
Psyr_4716: Psyr_4716 - Sarcosine oxidase, gamma subunit, heterotetrameric, at 5,589,332 to 5,589,964
_4716
Psyr_4717: Psyr_4717 - formyltetrahydrofolate deformylase, at 5,590,242 to 5,591,099
_4717
Position (kb) 5589
5590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5588.332 kb on - strand, within Psyr_4715 at 5588.332 kb on - strand, within Psyr_4715 at 5588.332 kb on - strand, within Psyr_4715 at 5588.332 kb on - strand, within Psyr_4715 at 5588.373 kb on + strand, within Psyr_4715 at 5588.502 kb on + strand, within Psyr_4715 at 5588.502 kb on + strand, within Psyr_4715 at 5588.536 kb on - strand, within Psyr_4715 at 5588.536 kb on - strand, within Psyr_4715 at 5588.724 kb on + strand, within Psyr_4715 at 5588.725 kb on - strand, within Psyr_4715 at 5588.793 kb on + strand, within Psyr_4715 at 5588.794 kb on - strand, within Psyr_4715 at 5589.111 kb on + strand at 5589.112 kb on - strand at 5589.174 kb on - strand at 5589.280 kb on - strand at 5589.664 kb on - strand, within Psyr_4716 at 5589.756 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.776 kb on + strand, within Psyr_4716 at 5589.777 kb on - strand, within Psyr_4716 at 5589.985 kb on - strand at 5590.015 kb on + strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.016 kb on - strand at 5590.083 kb on - strand at 5590.158 kb on - strand at 5590.225 kb on - strand at 5590.241 kb on + strand at 5590.242 kb on - strand at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.341 kb on + strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.342 kb on - strand, within Psyr_4717 at 5590.517 kb on - strand, within Psyr_4717 at 5590.575 kb on - strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.655 kb on + strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.656 kb on - strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.659 kb on + strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.660 kb on - strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.662 kb on + strand, within Psyr_4717 at 5590.761 kb on + strand, within Psyr_4717 at 5590.761 kb on + strand, within Psyr_4717 at 5590.761 kb on + strand, within Psyr_4717 at 5590.762 kb on - strand, within Psyr_4717 at 5590.762 kb on - strand, within Psyr_4717 at 5590.861 kb on - strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.873 kb on - strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.911 kb on + strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717 at 5590.912 kb on - strand, within Psyr_4717
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Sinomenine 10 mM remove 5,588,332 - Psyr_4715 0.69 -0.9 5,588,332 - Psyr_4715 0.69 -0.5 5,588,332 - Psyr_4715 0.69 +1.0 5,588,332 - Psyr_4715 0.69 +0.9 5,588,373 + Psyr_4715 0.70 -0.0 5,588,502 + Psyr_4715 0.74 -1.3 5,588,502 + Psyr_4715 0.74 +0.3 5,588,536 - Psyr_4715 0.75 -0.2 5,588,536 - Psyr_4715 0.75 +0.3 5,588,724 + Psyr_4715 0.82 +1.1 5,588,725 - Psyr_4715 0.82 +0.4 5,588,793 + Psyr_4715 0.84 +0.9 5,588,794 - Psyr_4715 0.84 -0.7 5,589,111 + -0.1 5,589,112 - +0.1 5,589,174 - -0.3 5,589,280 - -0.5 5,589,664 - Psyr_4716 0.52 -0.1 5,589,756 + Psyr_4716 0.67 -0.1 5,589,776 + Psyr_4716 0.70 +1.3 5,589,776 + Psyr_4716 0.70 -2.1 5,589,776 + Psyr_4716 0.70 +0.6 5,589,776 + Psyr_4716 0.70 +0.4 5,589,776 + Psyr_4716 0.70 +0.3 5,589,776 + Psyr_4716 0.70 +1.2 5,589,777 - Psyr_4716 0.70 -0.5 5,589,985 - +0.2 5,590,015 + -0.7 5,590,016 - +0.2 5,590,016 - +0.5 5,590,016 - +0.5 5,590,016 - +2.3 5,590,016 - -1.3 5,590,083 - -0.5 5,590,158 - +0.9 5,590,225 - -1.4 5,590,241 + -0.8 5,590,242 - -0.0 5,590,341 + Psyr_4717 0.12 +1.2 5,590,341 + Psyr_4717 0.12 -0.2 5,590,341 + Psyr_4717 0.12 -1.5 5,590,341 + Psyr_4717 0.12 -0.7 5,590,341 + Psyr_4717 0.12 +0.8 5,590,342 - Psyr_4717 0.12 -0.3 5,590,342 - Psyr_4717 0.12 +0.6 5,590,342 - Psyr_4717 0.12 -1.9 5,590,342 - Psyr_4717 0.12 -0.5 5,590,342 - Psyr_4717 0.12 +1.4 5,590,517 - Psyr_4717 0.32 +0.0 5,590,575 - Psyr_4717 0.39 +0.6 5,590,655 + Psyr_4717 0.48 -0.3 5,590,655 + Psyr_4717 0.48 +0.3 5,590,655 + Psyr_4717 0.48 -0.1 5,590,655 + Psyr_4717 0.48 +0.0 5,590,655 + Psyr_4717 0.48 +0.1 5,590,655 + Psyr_4717 0.48 +0.1 5,590,656 - Psyr_4717 0.48 -0.1 5,590,656 - Psyr_4717 0.48 -0.1 5,590,656 - Psyr_4717 0.48 +0.5 5,590,656 - Psyr_4717 0.48 +1.0 5,590,659 + Psyr_4717 0.49 -0.9 5,590,659 + Psyr_4717 0.49 +0.4 5,590,660 - Psyr_4717 0.49 -0.5 5,590,660 - Psyr_4717 0.49 -0.4 5,590,660 - Psyr_4717 0.49 +0.7 5,590,660 - Psyr_4717 0.49 +1.3 5,590,660 - Psyr_4717 0.49 -0.5 5,590,662 + Psyr_4717 0.49 -1.8 5,590,662 + Psyr_4717 0.49 +0.2 5,590,662 + Psyr_4717 0.49 -0.1 5,590,761 + Psyr_4717 0.60 +0.7 5,590,761 + Psyr_4717 0.60 -0.2 5,590,761 + Psyr_4717 0.60 -0.7 5,590,762 - Psyr_4717 0.61 +0.7 5,590,762 - Psyr_4717 0.61 -0.8 5,590,861 - Psyr_4717 0.72 +0.1 5,590,873 - Psyr_4717 0.74 -0.3 5,590,873 - Psyr_4717 0.74 -0.1 5,590,873 - Psyr_4717 0.74 -0.4 5,590,911 + Psyr_4717 0.78 +0.3 5,590,911 + Psyr_4717 0.78 +1.5 5,590,911 + Psyr_4717 0.78 -0.3 5,590,911 + Psyr_4717 0.78 +2.1 5,590,911 + Psyr_4717 0.78 +0.4 5,590,912 - Psyr_4717 0.78 +0.3 5,590,912 - Psyr_4717 0.78 +0.6 5,590,912 - Psyr_4717 0.78 +0.2 5,590,912 - Psyr_4717 0.78 +0.6 5,590,912 - Psyr_4717 0.78 -0.9 5,590,912 - Psyr_4717 0.78 +0.8 5,590,912 - Psyr_4717 0.78 +0.3 5,590,912 - Psyr_4717 0.78 -0.2
Or see this region's nucleotide sequence