Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2517

Experiment: KB with Sinomenine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2516 and Psyr_2517 are separated by 81 nucleotidesPsyr_2517 and Psyr_2518 are separated by 293 nucleotidesPsyr_2518 and Psyr_2519 are separated by 19 nucleotides Psyr_2516: Psyr_2516 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 2,925,448 to 2,926,458 _2516 Psyr_2517: Psyr_2517 - hypothetical protein, at 2,926,540 to 2,926,785 _2517 Psyr_2518: Psyr_2518 - conserved hypothetical protein, at 2,927,079 to 2,927,765 _2518 Psyr_2519: Psyr_2519 - Aldo/keto reductase, at 2,927,785 to 2,928,780 _2519 Position (kb) 2926 2927Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2925.733 kb on + strand, within Psyr_2516at 2925.733 kb on + strand, within Psyr_2516at 2925.734 kb on - strand, within Psyr_2516at 2925.886 kb on + strand, within Psyr_2516at 2925.886 kb on + strand, within Psyr_2516at 2925.886 kb on + strand, within Psyr_2516at 2925.886 kb on + strand, within Psyr_2516at 2925.886 kb on + strand, within Psyr_2516at 2925.886 kb on + strand, within Psyr_2516at 2925.887 kb on - strand, within Psyr_2516at 2925.887 kb on - strand, within Psyr_2516at 2925.887 kb on - strand, within Psyr_2516at 2925.887 kb on - strand, within Psyr_2516at 2925.887 kb on - strand, within Psyr_2516at 2925.887 kb on - strand, within Psyr_2516at 2925.995 kb on + strand, within Psyr_2516at 2926.104 kb on - strand, within Psyr_2516at 2926.109 kb on + strand, within Psyr_2516at 2926.109 kb on + strand, within Psyr_2516at 2926.109 kb on + strand, within Psyr_2516at 2926.109 kb on + strand, within Psyr_2516at 2926.109 kb on + strand, within Psyr_2516at 2926.109 kb on + strand, within Psyr_2516at 2926.109 kb on + strand, within Psyr_2516at 2926.110 kb on - strand, within Psyr_2516at 2926.110 kb on - strand, within Psyr_2516at 2926.110 kb on - strand, within Psyr_2516at 2926.110 kb on - strand, within Psyr_2516at 2926.307 kb on + strand, within Psyr_2516at 2926.307 kb on + strand, within Psyr_2516at 2926.307 kb on + strand, within Psyr_2516at 2926.308 kb on - strand, within Psyr_2516at 2926.308 kb on - strand, within Psyr_2516at 2926.311 kb on - strand, within Psyr_2516at 2926.311 kb on - strand, within Psyr_2516at 2926.384 kb on + strandat 2926.774 kb on - strandat 2926.790 kb on - strandat 2926.812 kb on - strandat 2926.812 kb on - strandat 2927.084 kb on + strandat 2927.230 kb on + strand, within Psyr_2518at 2927.231 kb on - strand, within Psyr_2518at 2927.231 kb on - strand, within Psyr_2518at 2927.302 kb on + strand, within Psyr_2518at 2927.403 kb on + strand, within Psyr_2518at 2927.404 kb on - strand, within Psyr_2518at 2927.409 kb on + strand, within Psyr_2518at 2927.409 kb on + strand, within Psyr_2518at 2927.526 kb on + strand, within Psyr_2518at 2927.527 kb on - strand, within Psyr_2518at 2927.545 kb on - strand, within Psyr_2518at 2927.545 kb on - strand, within Psyr_2518at 2927.545 kb on - strand, within Psyr_2518

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Sinomenine 10 mM
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2,925,733 + Psyr_2516 0.28 +0.5
2,925,733 + Psyr_2516 0.28 +1.7
2,925,734 - Psyr_2516 0.28 -0.9
2,925,886 + Psyr_2516 0.43 +0.7
2,925,886 + Psyr_2516 0.43 +2.1
2,925,886 + Psyr_2516 0.43 -0.1
2,925,886 + Psyr_2516 0.43 +0.2
2,925,886 + Psyr_2516 0.43 -1.3
2,925,886 + Psyr_2516 0.43 -0.7
2,925,887 - Psyr_2516 0.43 +0.5
2,925,887 - Psyr_2516 0.43 +0.8
2,925,887 - Psyr_2516 0.43 -0.4
2,925,887 - Psyr_2516 0.43 -1.3
2,925,887 - Psyr_2516 0.43 +0.7
2,925,887 - Psyr_2516 0.43 -1.1
2,925,995 + Psyr_2516 0.54 +0.4
2,926,104 - Psyr_2516 0.65 -0.1
2,926,109 + Psyr_2516 0.65 +0.1
2,926,109 + Psyr_2516 0.65 +0.7
2,926,109 + Psyr_2516 0.65 -0.2
2,926,109 + Psyr_2516 0.65 +0.5
2,926,109 + Psyr_2516 0.65 -1.1
2,926,109 + Psyr_2516 0.65 -2.3
2,926,109 + Psyr_2516 0.65 -0.4
2,926,110 - Psyr_2516 0.65 +0.1
2,926,110 - Psyr_2516 0.65 -1.2
2,926,110 - Psyr_2516 0.65 -0.1
2,926,110 - Psyr_2516 0.65 +0.5
2,926,307 + Psyr_2516 0.85 -0.4
2,926,307 + Psyr_2516 0.85 +0.3
2,926,307 + Psyr_2516 0.85 +1.1
2,926,308 - Psyr_2516 0.85 -2.3
2,926,308 - Psyr_2516 0.85 +0.8
2,926,311 - Psyr_2516 0.85 +0.1
2,926,311 - Psyr_2516 0.85 -0.1
2,926,384 + +0.1
2,926,774 - -0.7
2,926,790 - -0.3
2,926,812 - +0.2
2,926,812 - -2.4
2,927,084 + -1.0
2,927,230 + Psyr_2518 0.22 -0.2
2,927,231 - Psyr_2518 0.22 +2.9
2,927,231 - Psyr_2518 0.22 -1.2
2,927,302 + Psyr_2518 0.32 -0.7
2,927,403 + Psyr_2518 0.47 +0.3
2,927,404 - Psyr_2518 0.47 -0.9
2,927,409 + Psyr_2518 0.48 -2.1
2,927,409 + Psyr_2518 0.48 -0.3
2,927,526 + Psyr_2518 0.65 -0.5
2,927,527 - Psyr_2518 0.65 -0.7
2,927,545 - Psyr_2518 0.68 +1.6
2,927,545 - Psyr_2518 0.68 -0.5
2,927,545 - Psyr_2518 0.68 +0.1

Or see this region's nucleotide sequence