Experiment: 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3879 and PP_3880 are separated by 2 nucleotides PP_3880 and PP_3881 overlap by 4 nucleotides
PP_3879: PP_3879 - Phage portal protein, HK97 family, at 4,399,886 to 4,401,157
_3879
PP_3880: PP_3880 - conserved exported protein of unknown function, at 4,401,160 to 4,401,348
_3880
PP_3881: PP_3881 - putative Phage terminase, large subunit, at 4,401,345 to 4,403,153
_3881
Position (kb)
4401
4402 Strain fitness (log2 ratio)
-2
-1
0
1 at 4400.241 kb on + strand, within PP_3879 at 4400.242 kb on - strand, within PP_3879 at 4400.242 kb on - strand, within PP_3879 at 4400.271 kb on + strand, within PP_3879 at 4400.271 kb on + strand at 4400.293 kb on + strand, within PP_3879 at 4400.294 kb on - strand, within PP_3879 at 4400.316 kb on + strand, within PP_3879 at 4400.317 kb on - strand, within PP_3879 at 4400.575 kb on - strand, within PP_3879 at 4400.575 kb on - strand, within PP_3879 at 4400.641 kb on - strand, within PP_3879 at 4400.641 kb on - strand, within PP_3879 at 4400.641 kb on - strand, within PP_3879 at 4400.641 kb on - strand, within PP_3879 at 4400.815 kb on - strand, within PP_3879 at 4400.865 kb on + strand, within PP_3879 at 4400.866 kb on - strand at 4400.907 kb on + strand, within PP_3879 at 4400.907 kb on + strand, within PP_3879 at 4400.907 kb on + strand, within PP_3879 at 4400.972 kb on + strand, within PP_3879 at 4400.973 kb on - strand, within PP_3879 at 4400.981 kb on + strand, within PP_3879 at 4401.023 kb on - strand, within PP_3879 at 4401.023 kb on - strand, within PP_3879 at 4401.157 kb on + strand at 4401.157 kb on + strand at 4401.157 kb on + strand at 4401.158 kb on - strand at 4401.158 kb on - strand at 4401.158 kb on - strand at 4401.158 kb on - strand at 4401.190 kb on + strand, within PP_3880 at 4401.355 kb on - strand at 4401.445 kb on - strand at 4401.532 kb on - strand, within PP_3881 at 4401.532 kb on - strand, within PP_3881 at 4401.663 kb on + strand, within PP_3881 at 4401.677 kb on + strand, within PP_3881 at 4401.727 kb on + strand, within PP_3881 at 4401.806 kb on + strand, within PP_3881 at 4401.806 kb on + strand, within PP_3881 at 4401.949 kb on + strand, within PP_3881 at 4401.979 kb on + strand, within PP_3881 at 4401.980 kb on - strand, within PP_3881 at 4401.980 kb on - strand, within PP_3881 at 4401.980 kb on - strand, within PP_3881 at 4401.980 kb on - strand, within PP_3881 at 4402.022 kb on + strand, within PP_3881 at 4402.022 kb on + strand, within PP_3881 at 4402.022 kb on + strand, within PP_3881 at 4402.023 kb on - strand, within PP_3881 at 4402.216 kb on + strand, within PP_3881 at 4402.216 kb on + strand, within PP_3881 at 4402.217 kb on - strand, within PP_3881 at 4402.314 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.317 kb on - strand, within PP_3881 at 4402.317 kb on - strand, within PP_3881 at 4402.317 kb on - strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.319 kb on - strand, within PP_3881 at 4402.319 kb on - strand, within PP_3881
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay remove 4,400,241 + PP_3879 0.28 +1.3 4,400,242 - PP_3879 0.28 -0.5 4,400,242 - PP_3879 0.28 -0.8 4,400,271 + PP_3879 0.30 +0.1 4,400,271 + -0.0 4,400,293 + PP_3879 0.32 -0.8 4,400,294 - PP_3879 0.32 +0.6 4,400,316 + PP_3879 0.34 -0.0 4,400,317 - PP_3879 0.34 -0.0 4,400,575 - PP_3879 0.54 -1.0 4,400,575 - PP_3879 0.54 +0.1 4,400,641 - PP_3879 0.59 -2.0 4,400,641 - PP_3879 0.59 -1.2 4,400,641 - PP_3879 0.59 -0.0 4,400,641 - PP_3879 0.59 +0.9 4,400,815 - PP_3879 0.73 -0.8 4,400,865 + PP_3879 0.77 -0.3 4,400,866 - +0.6 4,400,907 + PP_3879 0.80 -0.1 4,400,907 + PP_3879 0.80 -0.1 4,400,907 + PP_3879 0.80 -1.0 4,400,972 + PP_3879 0.85 +0.1 4,400,973 - PP_3879 0.85 -0.6 4,400,981 + PP_3879 0.86 -0.2 4,401,023 - PP_3879 0.89 -1.0 4,401,023 - PP_3879 0.89 +0.1 4,401,157 + -0.9 4,401,157 + -0.4 4,401,157 + +0.1 4,401,158 - -0.4 4,401,158 - +0.8 4,401,158 - +0.8 4,401,158 - -0.7 4,401,190 + PP_3880 0.16 -2.1 4,401,355 - +0.4 4,401,445 - -0.8 4,401,532 - PP_3881 0.10 -0.9 4,401,532 - PP_3881 0.10 +0.6 4,401,663 + PP_3881 0.18 +0.2 4,401,677 + PP_3881 0.18 -1.0 4,401,727 + PP_3881 0.21 +0.6 4,401,806 + PP_3881 0.25 -0.4 4,401,806 + PP_3881 0.25 -0.2 4,401,949 + PP_3881 0.33 +1.6 4,401,979 + PP_3881 0.35 +1.0 4,401,980 - PP_3881 0.35 -0.1 4,401,980 - PP_3881 0.35 -0.4 4,401,980 - PP_3881 0.35 -0.9 4,401,980 - PP_3881 0.35 +0.4 4,402,022 + PP_3881 0.37 -0.9 4,402,022 + PP_3881 0.37 -0.0 4,402,022 + PP_3881 0.37 -0.5 4,402,023 - PP_3881 0.37 -1.3 4,402,216 + PP_3881 0.48 -0.0 4,402,216 + PP_3881 0.48 +0.6 4,402,217 - PP_3881 0.48 +1.4 4,402,314 + PP_3881 0.54 -0.4 4,402,316 + PP_3881 0.54 +1.3 4,402,316 + PP_3881 0.54 -0.0 4,402,316 + PP_3881 0.54 -0.3 4,402,316 + PP_3881 0.54 -1.6 4,402,317 - PP_3881 0.54 +1.2 4,402,317 - PP_3881 0.54 -1.3 4,402,317 - PP_3881 0.54 +0.8 4,402,318 + PP_3881 0.54 -0.5 4,402,318 + PP_3881 0.54 +0.2 4,402,318 + PP_3881 0.54 -0.0 4,402,318 + PP_3881 0.54 +0.3 4,402,318 + PP_3881 0.54 +0.6 4,402,318 + PP_3881 0.54 +1.6 4,402,319 - PP_3881 0.54 -0.1 4,402,319 - PP_3881 0.54 -1.4
Or see this region's nucleotide sequence