Strain Fitness in Escherichia coli BW25113 around b0958

Experiment: LB Anaerobic with Chloramphenicol 0.00000390625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntompA and sulA are separated by 356 nucleotidessulA and yccR are separated by 218 nucleotidesyccR and b0960 overlap by 38 nucleotides b0957: ompA - outer membrane protein A (3a;II*;G;d) (NCBI), at 1,018,236 to 1,019,276 ompA b0958: sulA - SOS cell division inhibitor (NCBI), at 1,019,633 to 1,020,142 sulA b0959: yccR - hypothetical protein (NCBI), at 1,020,361 to 1,020,990 yccR b0960: b0960 - orf, hypothetical protein (VIMSS), at 1,020,953 to 1,023,106 b0960 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1018.649 kb on - strand, within ompAat 1018.740 kb on + strand, within ompAat 1018.759 kb on + strand, within ompAat 1018.987 kb on - strand, within ompAat 1019.129 kb on + strand, within ompAat 1019.195 kb on - strandat 1019.243 kb on + strandat 1019.247 kb on - strandat 1019.426 kb on - strandat 1019.426 kb on - strandat 1019.426 kb on - strandat 1019.430 kb on + strandat 1019.793 kb on - strand, within sulAat 1019.842 kb on + strand, within sulAat 1019.853 kb on + strand, within sulAat 1019.911 kb on - strand, within sulAat 1020.001 kb on - strand, within sulAat 1020.001 kb on - strand, within sulAat 1020.042 kb on + strand, within sulAat 1020.049 kb on + strand, within sulAat 1020.049 kb on + strand, within sulAat 1020.226 kb on - strandat 1020.419 kb on + strandat 1020.453 kb on + strand, within yccRat 1020.496 kb on - strand, within yccRat 1020.496 kb on - strand, within yccRat 1020.529 kb on + strand, within yccRat 1020.529 kb on + strand, within yccRat 1020.534 kb on + strand, within yccRat 1020.534 kb on + strand, within yccRat 1020.558 kb on - strand, within yccRat 1020.597 kb on - strand, within yccRat 1020.605 kb on - strand, within yccRat 1020.640 kb on + strand, within yccRat 1020.799 kb on - strand, within yccRat 1020.800 kb on - strand, within yccRat 1020.894 kb on + strand, within yccRat 1020.983 kb on - strandat 1020.998 kb on - strandat 1021.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Chloramphenicol 0.00000390625 mM
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1,018,649 - ompA b0957 0.40 -3.4
1,018,740 + ompA b0957 0.48 -2.4
1,018,759 + ompA b0957 0.50 -1.6
1,018,987 - ompA b0957 0.72 -1.1
1,019,129 + ompA b0957 0.86 +1.4
1,019,195 - -2.3
1,019,243 + -0.6
1,019,247 - -2.1
1,019,426 - -1.4
1,019,426 - -2.0
1,019,426 - -1.1
1,019,430 + +0.4
1,019,793 - sulA b0958 0.31 +0.4
1,019,842 + sulA b0958 0.41 -0.3
1,019,853 + sulA b0958 0.43 -0.2
1,019,911 - sulA b0958 0.55 -1.3
1,020,001 - sulA b0958 0.72 -0.5
1,020,001 - sulA b0958 0.72 +0.1
1,020,042 + sulA b0958 0.80 +3.4
1,020,049 + sulA b0958 0.82 -0.6
1,020,049 + sulA b0958 0.82 -0.0
1,020,226 - +0.3
1,020,419 + -0.4
1,020,453 + yccR b0959 0.15 -0.5
1,020,496 - yccR b0959 0.21 -2.4
1,020,496 - yccR b0959 0.21 -0.2
1,020,529 + yccR b0959 0.27 -0.5
1,020,529 + yccR b0959 0.27 +0.4
1,020,534 + yccR b0959 0.27 -0.1
1,020,534 + yccR b0959 0.27 +0.0
1,020,558 - yccR b0959 0.31 -0.8
1,020,597 - yccR b0959 0.37 +0.4
1,020,605 - yccR b0959 0.39 -0.9
1,020,640 + yccR b0959 0.44 +0.3
1,020,799 - yccR b0959 0.70 -2.2
1,020,800 - yccR b0959 0.70 -1.0
1,020,894 + yccR b0959 0.85 -0.7
1,020,983 - +0.9
1,020,998 - -0.2
1,021,034 - -1.2

Or see this region's nucleotide sequence