Strain Fitness in Escherichia coli BW25113 around b3018

Experiment: LB Anaerobic with Benzethonium chloride 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufI and plsC are separated by 74 nucleotidesplsC and parC are separated by 233 nucleotides b3017: sufI - repressor protein for FtsI (NCBI), at 3,159,279 to 3,160,691 sufI b3018: plsC - 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI), at 3,160,766 to 3,161,503 plsC b3019: parC - DNA topoisomerase IV subunit A (NCBI), at 3,161,737 to 3,163,995 parC Position (kb) 3160 3161 3162Strain fitness (log2 ratio) -3 -2 -1 0 1at 3159.768 kb on - strand, within sufIat 3159.769 kb on - strand, within sufIat 3159.769 kb on - strand, within sufIat 3159.785 kb on + strand, within sufIat 3159.785 kb on + strand, within sufIat 3159.818 kb on + strand, within sufIat 3159.818 kb on + strand, within sufIat 3159.837 kb on - strand, within sufIat 3159.959 kb on + strand, within sufIat 3159.970 kb on - strand, within sufIat 3160.019 kb on - strand, within sufIat 3160.028 kb on - strand, within sufIat 3160.236 kb on + strand, within sufIat 3160.266 kb on - strand, within sufIat 3160.266 kb on - strand, within sufIat 3160.269 kb on + strand, within sufIat 3160.269 kb on + strand, within sufIat 3160.270 kb on + strand, within sufIat 3160.272 kb on + strand, within sufIat 3160.287 kb on + strand, within sufIat 3160.308 kb on - strand, within sufIat 3160.335 kb on + strand, within sufIat 3160.370 kb on + strand, within sufIat 3160.371 kb on + strand, within sufIat 3160.494 kb on - strand, within sufIat 3160.494 kb on - strand, within sufIat 3160.518 kb on - strand, within sufIat 3160.524 kb on + strand, within sufIat 3160.538 kb on - strand, within sufIat 3160.540 kb on + strand, within sufIat 3160.607 kb on - strandat 3160.620 kb on - strandat 3160.634 kb on + strandat 3160.634 kb on + strandat 3160.634 kb on + strandat 3160.637 kb on - strandat 3160.685 kb on + strandat 3160.685 kb on + strandat 3160.687 kb on + strandat 3160.691 kb on + strandat 3160.701 kb on + strandat 3160.716 kb on + strandat 3160.724 kb on - strandat 3160.726 kb on - strandat 3161.508 kb on - strandat 3161.532 kb on + strandat 3161.699 kb on + strandat 3161.710 kb on + strandat 3161.710 kb on + strandat 3161.742 kb on - strandat 3161.742 kb on - strandat 3161.779 kb on - strandat 3161.779 kb on - strandat 3161.799 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Benzethonium chloride 0.000015625 mM
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3,159,768 - sufI b3017 0.35 -0.1
3,159,769 - sufI b3017 0.35 -0.9
3,159,769 - sufI b3017 0.35 -0.9
3,159,785 + sufI b3017 0.36 +0.0
3,159,785 + sufI b3017 0.36 -0.1
3,159,818 + sufI b3017 0.38 -0.0
3,159,818 + sufI b3017 0.38 -1.2
3,159,837 - sufI b3017 0.39 +0.1
3,159,959 + sufI b3017 0.48 -0.8
3,159,970 - sufI b3017 0.49 -0.1
3,160,019 - sufI b3017 0.52 -0.5
3,160,028 - sufI b3017 0.53 +0.5
3,160,236 + sufI b3017 0.68 -1.0
3,160,266 - sufI b3017 0.70 +1.2
3,160,266 - sufI b3017 0.70 -1.6
3,160,269 + sufI b3017 0.70 -0.0
3,160,269 + sufI b3017 0.70 -0.4
3,160,270 + sufI b3017 0.70 -0.8
3,160,272 + sufI b3017 0.70 -2.2
3,160,287 + sufI b3017 0.71 -0.2
3,160,308 - sufI b3017 0.73 -0.9
3,160,335 + sufI b3017 0.75 +0.2
3,160,370 + sufI b3017 0.77 -0.2
3,160,371 + sufI b3017 0.77 -3.3
3,160,494 - sufI b3017 0.86 +0.3
3,160,494 - sufI b3017 0.86 -0.5
3,160,518 - sufI b3017 0.88 -0.7
3,160,524 + sufI b3017 0.88 -0.1
3,160,538 - sufI b3017 0.89 +0.0
3,160,540 + sufI b3017 0.89 -1.2
3,160,607 - -0.6
3,160,620 - -0.5
3,160,634 + -1.6
3,160,634 + -0.7
3,160,634 + -0.8
3,160,637 - -0.1
3,160,685 + -1.2
3,160,685 + +0.0
3,160,687 + -0.7
3,160,691 + +1.6
3,160,701 + +1.4
3,160,716 + +0.8
3,160,724 - -0.0
3,160,726 - -0.5
3,161,508 - +0.1
3,161,532 + -0.6
3,161,699 + -0.4
3,161,710 + +0.1
3,161,710 + +0.8
3,161,742 - -0.9
3,161,742 - -0.0
3,161,779 - +0.7
3,161,779 - +1.0
3,161,799 + -0.2

Or see this region's nucleotide sequence