Strain Fitness in Escherichia coli BW25113 around b4234

Experiment: LB Anaerobic with Benzethonium chloride 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmpl and yjgA are separated by 155 nucleotidesyjgA and pmbA are separated by 93 nucleotides b4233: mpl - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI), at 4,453,808 to 4,455,181 mpl b4234: yjgA - hypothetical protein (NCBI), at 4,455,337 to 4,455,888 yjgA b4235: pmbA - predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI), at 4,455,982 to 4,457,334 pmbA Position (kb) 4455 4456Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4454.348 kb on - strand, within mplat 4454.385 kb on + strand, within mplat 4454.506 kb on + strand, within mplat 4454.508 kb on + strand, within mplat 4454.508 kb on + strand, within mplat 4454.624 kb on - strand, within mplat 4454.624 kb on - strand, within mplat 4454.697 kb on + strand, within mplat 4454.783 kb on + strand, within mplat 4454.896 kb on - strand, within mplat 4454.932 kb on + strand, within mplat 4454.944 kb on - strand, within mplat 4454.944 kb on - strand, within mplat 4454.968 kb on - strand, within mplat 4455.002 kb on - strand, within mplat 4455.020 kb on - strand, within mplat 4455.031 kb on - strand, within mplat 4455.047 kb on - strandat 4455.067 kb on + strandat 4455.067 kb on + strandat 4455.093 kb on + strandat 4455.129 kb on + strandat 4455.262 kb on - strandat 4455.351 kb on + strandat 4455.469 kb on - strand, within yjgAat 4455.483 kb on - strand, within yjgAat 4455.582 kb on - strand, within yjgAat 4455.628 kb on - strand, within yjgAat 4455.628 kb on - strand, within yjgAat 4455.695 kb on - strand, within yjgAat 4455.727 kb on - strand, within yjgAat 4455.924 kb on + strandat 4455.960 kb on - strandat 4455.971 kb on + strandat 4456.031 kb on - strandat 4456.031 kb on - strandat 4456.053 kb on - strandat 4456.053 kb on - strandat 4456.054 kb on + strandat 4456.062 kb on - strandat 4456.062 kb on - strandat 4456.083 kb on - strandat 4456.093 kb on - strandat 4456.131 kb on + strand, within pmbAat 4456.132 kb on + strand, within pmbAat 4456.132 kb on + strand, within pmbAat 4456.253 kb on + strand, within pmbAat 4456.261 kb on - strand, within pmbAat 4456.263 kb on - strand, within pmbAat 4456.263 kb on - strand, within pmbAat 4456.281 kb on + strand, within pmbAat 4456.281 kb on + strand, within pmbAat 4456.367 kb on - strand, within pmbAat 4456.367 kb on - strand, within pmbAat 4456.396 kb on + strand, within pmbAat 4456.396 kb on + strand, within pmbAat 4456.409 kb on + strand, within pmbAat 4456.409 kb on + strand, within pmbAat 4456.417 kb on - strand, within pmbAat 4456.448 kb on + strand, within pmbAat 4456.448 kb on + strand, within pmbAat 4456.554 kb on - strand, within pmbAat 4456.591 kb on + strand, within pmbAat 4456.601 kb on + strand, within pmbAat 4456.612 kb on - strand, within pmbAat 4456.618 kb on - strand, within pmbAat 4456.687 kb on + strand, within pmbAat 4456.703 kb on + strand, within pmbAat 4456.703 kb on + strand, within pmbAat 4456.711 kb on - strand, within pmbAat 4456.711 kb on - strand, within pmbAat 4456.771 kb on + strand, within pmbAat 4456.775 kb on - strand, within pmbAat 4456.775 kb on - strand, within pmbA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Benzethonium chloride 0.00003125 mM
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4,454,348 - mpl b4233 0.39 -1.1
4,454,385 + mpl b4233 0.42 +0.6
4,454,506 + mpl b4233 0.51 -0.9
4,454,508 + mpl b4233 0.51 -2.7
4,454,508 + mpl b4233 0.51 -2.7
4,454,624 - mpl b4233 0.59 -3.1
4,454,624 - mpl b4233 0.59 -2.2
4,454,697 + mpl b4233 0.65 -0.4
4,454,783 + mpl b4233 0.71 -2.2
4,454,896 - mpl b4233 0.79 -0.5
4,454,932 + mpl b4233 0.82 -0.1
4,454,944 - mpl b4233 0.83 -0.2
4,454,944 - mpl b4233 0.83 +0.7
4,454,968 - mpl b4233 0.84 -2.7
4,455,002 - mpl b4233 0.87 -3.5
4,455,020 - mpl b4233 0.88 -0.2
4,455,031 - mpl b4233 0.89 -0.9
4,455,047 - +0.3
4,455,067 + +1.4
4,455,067 + -2.7
4,455,093 + -0.3
4,455,129 + -1.4
4,455,262 - +0.3
4,455,351 + -0.5
4,455,469 - yjgA b4234 0.24 -0.5
4,455,483 - yjgA b4234 0.26 -1.1
4,455,582 - yjgA b4234 0.44 +1.2
4,455,628 - yjgA b4234 0.53 -0.6
4,455,628 - yjgA b4234 0.53 -1.3
4,455,695 - yjgA b4234 0.65 -1.1
4,455,727 - yjgA b4234 0.71 -0.6
4,455,924 + +1.3
4,455,960 - -0.5
4,455,971 + -1.2
4,456,031 - +1.7
4,456,031 - +1.3
4,456,053 - -1.6
4,456,053 - +1.4
4,456,054 + -0.3
4,456,062 - -1.6
4,456,062 - +0.3
4,456,083 - +1.9
4,456,093 - -2.6
4,456,131 + pmbA b4235 0.11 -0.7
4,456,132 + pmbA b4235 0.11 +0.2
4,456,132 + pmbA b4235 0.11 -0.2
4,456,253 + pmbA b4235 0.20 +2.5
4,456,261 - pmbA b4235 0.21 +0.0
4,456,263 - pmbA b4235 0.21 -0.7
4,456,263 - pmbA b4235 0.21 +1.8
4,456,281 + pmbA b4235 0.22 -1.3
4,456,281 + pmbA b4235 0.22 +0.5
4,456,367 - pmbA b4235 0.28 -0.3
4,456,367 - pmbA b4235 0.28 +1.1
4,456,396 + pmbA b4235 0.31 -1.3
4,456,396 + pmbA b4235 0.31 -2.2
4,456,409 + pmbA b4235 0.32 -1.9
4,456,409 + pmbA b4235 0.32 -2.8
4,456,417 - pmbA b4235 0.32 -0.6
4,456,448 + pmbA b4235 0.34 -2.9
4,456,448 + pmbA b4235 0.34 +1.6
4,456,554 - pmbA b4235 0.42 -0.2
4,456,591 + pmbA b4235 0.45 -0.5
4,456,601 + pmbA b4235 0.46 -3.3
4,456,612 - pmbA b4235 0.47 +1.6
4,456,618 - pmbA b4235 0.47 -1.2
4,456,687 + pmbA b4235 0.52 +1.5
4,456,703 + pmbA b4235 0.53 +1.1
4,456,703 + pmbA b4235 0.53 +1.5
4,456,711 - pmbA b4235 0.54 -2.1
4,456,711 - pmbA b4235 0.54 +1.3
4,456,771 + pmbA b4235 0.58 -0.6
4,456,775 - pmbA b4235 0.59 -0.7
4,456,775 - pmbA b4235 0.59 -3.1

Or see this region's nucleotide sequence