Strain Fitness in Escherichia coli BW25113 around b4206
Experiment: LB Anaerobic with Benzethonium chloride 0.00003125 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB Anaerobic with Benzethonium chloride 0.00003125 mM |
---|---|---|---|---|---|
remove | |||||
4,425,110 | + | yjfZ | b4204 | 0.58 | -0.5 |
4,425,110 | + | yjfZ | b4204 | 0.58 | -0.3 |
4,425,125 | + | yjfZ | b4204 | 0.60 | +0.3 |
4,425,161 | + | yjfZ | b4204 | 0.64 | +2.3 |
4,425,161 | + | yjfZ | b4204 | 0.64 | -1.0 |
4,425,165 | + | yjfZ | b4204 | 0.65 | -0.3 |
4,425,166 | + | yjfZ | b4204 | 0.65 | +0.7 |
4,425,166 | + | yjfZ | b4204 | 0.65 | -1.3 |
4,425,170 | + | yjfZ | b4204 | 0.65 | +1.3 |
4,425,170 | + | yjfZ | b4204 | 0.65 | +1.3 |
4,425,210 | - | yjfZ | b4204 | 0.70 | +1.3 |
4,425,215 | - | yjfZ | b4204 | 0.71 | -1.3 |
4,425,221 | - | yjfZ | b4204 | 0.72 | -0.3 |
4,425,271 | + | yjfZ | b4204 | 0.78 | +0.3 |
4,425,387 | + | +1.3 | |||
4,425,435 | + | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,638 | - | +1.3 | |||
4,425,641 | - | +1.3 | |||
4,425,651 | - | +1.3 | |||
4,425,670 | - | +1.3 | |||
4,425,670 | - | +1.3 | |||
4,425,809 | + | ytfA | b4205 | 0.23 | +1.3 |
4,425,809 | + | ytfA | b4205 | 0.23 | +1.3 |
4,425,817 | - | ytfA | b4205 | 0.25 | +1.3 |
4,425,817 | - | ytfA | b4205 | 0.25 | +1.3 |
4,425,819 | - | ytfA | b4205 | 0.25 | -0.7 |
4,425,829 | - | ytfA | b4205 | 0.28 | +1.3 |
4,425,829 | - | ytfA | b4205 | 0.28 | -0.3 |
4,425,853 | - | ytfA | b4205 | 0.34 | -3.0 |
4,425,884 | - | ytfA | b4205 | 0.42 | -1.0 |
4,425,884 | - | ytfA | b4205 | 0.42 | +1.3 |
4,425,996 | - | ytfA | b4205 | 0.69 | +2.2 |
4,425,997 | - | ytfA | b4205 | 0.70 | +1.5 |
4,425,997 | - | ytfA | b4205 | 0.70 | +0.5 |
4,425,997 | - | ytfA | b4205 | 0.70 | -0.7 |
4,425,997 | - | ytfA | b4205 | 0.70 | -1.3 |
4,425,997 | - | ytfA | b4205 | 0.70 | +4.3 |
4,425,997 | - | ytfA | b4205 | 0.70 | -0.7 |
4,425,997 | - | ytfA | b4205 | 0.70 | +0.8 |
4,425,997 | - | ytfA | b4205 | 0.70 | +0.9 |
4,425,997 | - | ytfA | b4205 | 0.70 | -0.3 |
4,425,999 | + | ytfA | b4205 | 0.70 | +1.3 |
4,425,999 | + | ytfA | b4205 | 0.70 | +1.3 |
4,426,009 | - | ytfA | b4205 | 0.73 | +1.7 |
4,426,013 | - | ytfA | b4205 | 0.74 | +1.5 |
4,426,016 | - | ytfA | b4205 | 0.74 | -1.3 |
4,426,016 | - | ytfA | b4205 | 0.74 | -1.0 |
4,426,021 | - | ytfA | b4205 | 0.76 | -0.9 |
4,426,021 | - | ytfA | b4205 | 0.76 | -2.2 |
4,426,021 | - | ytfA | b4205 | 0.76 | +0.2 |
4,426,031 | - | ytfA | b4205 | 0.78 | -1.1 |
4,426,031 | - | ytfA | b4205 | 0.78 | -1.0 |
4,426,031 | - | ytfA | b4205 | 0.78 | -1.0 |
4,426,031 | - | ytfA | b4205 | 0.78 | -2.6 |
4,426,031 | - | ytfA | b4205 | 0.78 | +1.1 |
4,426,035 | + | ytfA | b4205 | 0.79 | +0.3 |
4,426,035 | + | ytfA | b4205 | 0.79 | +1.3 |
4,426,035 | + | ytfA | b4205 | 0.79 | +2.3 |
4,426,042 | - | ytfA | b4205 | 0.81 | +1.3 |
4,426,043 | - | ytfA | b4205 | 0.81 | -1.1 |
4,426,043 | - | ytfA | b4205 | 0.81 | -1.5 |
4,426,046 | - | ytfA | b4205 | 0.82 | +2.4 |
4,426,046 | - | ytfA | b4205 | 0.82 | -2.0 |
4,426,046 | - | ytfA | b4205 | 0.82 | +1.0 |
4,426,052 | - | ytfA | b4205 | 0.83 | +1.2 |
4,426,053 | - | ytfA | b4205 | 0.84 | +0.3 |
4,426,053 | - | ytfA | b4205 | 0.84 | -1.7 |
4,426,053 | - | ytfA | b4205 | 0.84 | +1.6 |
4,426,055 | - | ytfA | b4205 | 0.84 | -1.9 |
4,426,056 | - | ytfA | b4205 | 0.84 | -0.4 |
4,426,057 | - | ytfA | b4205 | 0.85 | -1.0 |
4,426,069 | - | ytfA | b4205 | 0.88 | +0.1 |
4,426,090 | - | +0.5 | |||
4,426,090 | - | +0.4 | |||
4,426,097 | + | -1.7 | |||
4,426,099 | + | -0.7 | |||
4,426,099 | + | -1.0 | |||
4,426,102 | - | +0.7 | |||
4,426,105 | - | +1.5 | |||
4,426,105 | - | -1.2 | |||
4,426,105 | - | -0.4 | |||
4,426,124 | - | +0.1 | |||
4,426,169 | + | ytfB | b4206 | 0.10 | -2.7 |
4,426,169 | + | ytfB | b4206 | 0.10 | -0.6 |
4,426,172 | + | ytfB | b4206 | 0.11 | -1.0 |
4,426,182 | - | ytfB | b4206 | 0.13 | -0.3 |
4,426,188 | - | ytfB | b4206 | 0.13 | -1.8 |
4,426,191 | - | ytfB | b4206 | 0.14 | -2.5 |
4,426,191 | - | ytfB | b4206 | 0.14 | +1.6 |
4,426,201 | - | ytfB | b4206 | 0.15 | +0.7 |
4,426,248 | + | ytfB | b4206 | 0.23 | +1.1 |
4,426,248 | + | ytfB | b4206 | 0.23 | -3.8 |
4,426,259 | + | ytfB | b4206 | 0.25 | +0.6 |
4,426,259 | + | ytfB | b4206 | 0.25 | -2.3 |
4,426,267 | - | ytfB | b4206 | 0.26 | +0.5 |
4,426,277 | + | ytfB | b4206 | 0.27 | -3.9 |
4,426,280 | - | ytfB | b4206 | 0.28 | -0.3 |
4,426,292 | - | ytfB | b4206 | 0.30 | -0.2 |
4,426,307 | - | ytfB | b4206 | 0.32 | -2.6 |
4,426,443 | + | ytfB | b4206 | 0.53 | -1.7 |
4,426,451 | - | ytfB | b4206 | 0.55 | -3.0 |
4,426,577 | - | ytfB | b4206 | 0.74 | -1.3 |
4,426,673 | - | ytfB | b4206 | 0.89 | +0.6 |
4,426,673 | - | ytfB | b4206 | 0.89 | -1.0 |
4,426,673 | - | ytfB | b4206 | 0.89 | -3.5 |
4,426,731 | + | -1.9 | |||
4,426,731 | + | -1.1 | |||
4,426,747 | + | -3.0 | |||
4,426,750 | - | +1.8 | |||
4,426,755 | - | +0.4 | |||
4,426,789 | + | -3.7 | |||
4,426,792 | - | +2.3 | |||
4,426,792 | - | +2.5 | |||
4,426,844 | + | -2.3 | |||
4,426,844 | + | -1.2 | |||
4,426,878 | - | +2.4 | |||
4,426,911 | + | -1.7 | |||
4,426,911 | + | -2.0 | |||
4,426,912 | + | +1.4 | |||
4,426,922 | - | -1.3 | |||
4,426,922 | - | +0.9 | |||
4,426,932 | + | -2.6 | |||
4,426,932 | + | -0.3 | |||
4,426,933 | + | +0.2 | |||
4,426,965 | - | +2.4 | |||
4,427,007 | - | +1.9 | |||
4,427,007 | - | +2.6 | |||
4,427,009 | + | -1.3 | |||
4,427,022 | + | fklB | b4207 | 0.10 | -1.9 |
4,427,114 | + | fklB | b4207 | 0.25 | +1.9 |
4,427,132 | - | fklB | b4207 | 0.28 | +4.1 |
4,427,161 | + | fklB | b4207 | 0.33 | +1.3 |
4,427,215 | - | fklB | b4207 | 0.41 | +2.9 |
4,427,243 | + | fklB | b4207 | 0.46 | +1.6 |
4,427,251 | - | fklB | b4207 | 0.47 | -1.5 |
4,427,251 | - | fklB | b4207 | 0.47 | -3.3 |
4,427,251 | - | fklB | b4207 | 0.47 | -1.5 |
4,427,298 | - | +0.3 | |||
4,427,298 | - | fklB | b4207 | 0.55 | -2.0 |
4,427,345 | + | fklB | b4207 | 0.62 | +2.0 |
4,427,371 | - | fklB | b4207 | 0.67 | +3.8 |
4,427,371 | - | fklB | b4207 | 0.67 | +0.9 |
4,427,371 | - | fklB | b4207 | 0.67 | +1.3 |
4,427,381 | - | fklB | b4207 | 0.68 | +2.0 |
4,427,394 | - | fklB | b4207 | 0.70 | +0.0 |
4,427,394 | - | fklB | b4207 | 0.70 | +0.6 |
4,427,415 | + | fklB | b4207 | 0.74 | +0.9 |
4,427,415 | + | fklB | b4207 | 0.74 | +0.6 |
4,427,541 | - | +2.6 | |||
4,427,541 | - | -1.3 | |||
4,427,563 | + | -0.6 | |||
4,427,563 | + | -3.2 | |||
4,427,580 | - | +0.5 | |||
4,427,624 | - | -0.9 | |||
4,427,710 | + | +0.1 |
Or see this region's nucleotide sequence