Strain Fitness in Escherichia coli BW25113 around b2914

Experiment: LB Anaerobic with Benzethonium chloride 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntserA and rpiA are separated by 255 nucleotidesrpiA and yqfE are separated by 55 nucleotidesyqfE and argP are separated by 51 nucleotides b2913: serA - D-3-phosphoglycerate dehydrogenase (NCBI), at 3,055,200 to 3,056,432 serA b2914: rpiA - ribose-5-phosphate isomerase A (NCBI), at 3,056,688 to 3,057,347 rpiA b2915: yqfE - hypothetical protein (RefSeq), at 3,057,403 to 3,057,723 yqfE b2916: argP - chromosome replication initiation inhibitor protein (NCBI), at 3,057,775 to 3,058,668 argP Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3055.708 kb on + strand, within serAat 3055.745 kb on + strand, within serAat 3055.745 kb on + strand, within serAat 3055.749 kb on - strand, within serAat 3055.749 kb on - strand, within serAat 3055.802 kb on - strand, within serAat 3055.843 kb on - strand, within serAat 3055.850 kb on + strand, within serAat 3055.869 kb on - strand, within serAat 3056.013 kb on + strand, within serAat 3056.118 kb on + strand, within serAat 3056.118 kb on - strand, within serAat 3056.132 kb on - strand, within serAat 3056.132 kb on - strand, within serAat 3056.177 kb on + strand, within serAat 3056.177 kb on + strand, within serAat 3056.253 kb on - strand, within serAat 3056.345 kb on + strandat 3056.388 kb on - strandat 3056.487 kb on - strandat 3056.551 kb on - strandat 3056.578 kb on + strandat 3056.600 kb on - strandat 3056.617 kb on + strandat 3057.409 kb on - strandat 3057.496 kb on - strand, within yqfEat 3057.496 kb on - strand, within yqfEat 3057.502 kb on + strand, within yqfEat 3057.505 kb on - strand, within yqfEat 3057.598 kb on - strand, within yqfEat 3057.705 kb on + strandat 3057.712 kb on - strandat 3057.927 kb on + strand, within argPat 3057.989 kb on + strand, within argPat 3057.989 kb on + strand, within argPat 3058.012 kb on - strand, within argPat 3058.012 kb on - strand, within argPat 3058.242 kb on + strand, within argPat 3058.275 kb on - strand, within argPat 3058.275 kb on - strand, within argPat 3058.275 kb on - strand, within argP

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Benzethonium chloride 0.00003125 mM
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3,055,708 + serA b2913 0.41 -1.8
3,055,745 + serA b2913 0.44 -1.1
3,055,745 + serA b2913 0.44 +0.6
3,055,749 - serA b2913 0.45 +0.2
3,055,749 - serA b2913 0.45 +1.6
3,055,802 - serA b2913 0.49 +1.3
3,055,843 - serA b2913 0.52 -0.6
3,055,850 + serA b2913 0.53 -1.1
3,055,869 - serA b2913 0.54 +0.8
3,056,013 + serA b2913 0.66 +1.7
3,056,118 + serA b2913 0.74 +1.4
3,056,118 - serA b2913 0.74 -0.2
3,056,132 - serA b2913 0.76 -1.1
3,056,132 - serA b2913 0.76 +0.1
3,056,177 + serA b2913 0.79 +2.4
3,056,177 + serA b2913 0.79 +0.2
3,056,253 - serA b2913 0.85 -2.2
3,056,345 + -0.4
3,056,388 - +2.2
3,056,487 - -2.9
3,056,551 - +1.4
3,056,578 + -0.8
3,056,600 - -2.5
3,056,617 + +1.7
3,057,409 - +0.8
3,057,496 - yqfE b2915 0.29 -0.6
3,057,496 - yqfE b2915 0.29 -1.3
3,057,502 + yqfE b2915 0.31 -2.4
3,057,505 - yqfE b2915 0.32 -1.8
3,057,598 - yqfE b2915 0.61 -1.1
3,057,705 + -1.0
3,057,712 - -0.8
3,057,927 + argP b2916 0.17 -0.8
3,057,989 + argP b2916 0.24 -0.5
3,057,989 + argP b2916 0.24 -0.0
3,058,012 - argP b2916 0.27 +1.0
3,058,012 - argP b2916 0.27 -1.4
3,058,242 + argP b2916 0.52 -2.8
3,058,275 - argP b2916 0.56 -0.8
3,058,275 - argP b2916 0.56 -1.1
3,058,275 - argP b2916 0.56 -2.1

Or see this region's nucleotide sequence