Strain Fitness in Escherichia coli BW25113 around b2800

Experiment: LB Anaerobic with Benzethonium chloride 0.00003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucO and fucA are separated by 27 nucleotidesfucA and fucP are separated by 546 nucleotides b2799: fucO - L-1,2-propanediol oxidoreductase (NCBI), at 2,929,887 to 2,931,035 fucO b2800: fucA - L-fuculose phosphate aldolase (NCBI), at 2,931,063 to 2,931,710 fucA b2801: fucP - L-fucose transporter (NCBI), at 2,932,257 to 2,933,573 fucP Position (kb) 2931 2932Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2930.137 kb on + strand, within fucOat 2930.161 kb on + strand, within fucOat 2930.161 kb on + strand, within fucOat 2930.189 kb on - strand, within fucOat 2930.198 kb on + strand, within fucOat 2930.215 kb on - strand, within fucOat 2930.248 kb on - strand, within fucOat 2930.280 kb on + strand, within fucOat 2930.288 kb on - strand, within fucOat 2930.298 kb on - strand, within fucOat 2930.298 kb on - strand, within fucOat 2930.362 kb on + strand, within fucOat 2930.367 kb on + strand, within fucOat 2930.406 kb on - strand, within fucOat 2930.406 kb on - strand, within fucOat 2930.417 kb on + strandat 2930.427 kb on + strand, within fucOat 2930.427 kb on + strand, within fucOat 2930.622 kb on - strand, within fucOat 2930.660 kb on + strand, within fucOat 2930.676 kb on + strand, within fucOat 2930.677 kb on - strand, within fucOat 2930.806 kb on - strand, within fucOat 2930.806 kb on - strand, within fucOat 2930.832 kb on - strand, within fucOat 2930.856 kb on + strand, within fucOat 2930.872 kb on - strand, within fucOat 2930.877 kb on - strand, within fucOat 2930.877 kb on - strand, within fucOat 2930.892 kb on + strand, within fucOat 2931.131 kb on + strand, within fucAat 2931.172 kb on + strand, within fucAat 2931.349 kb on - strand, within fucAat 2931.349 kb on - strand, within fucAat 2931.381 kb on + strand, within fucAat 2931.435 kb on - strand, within fucAat 2931.489 kb on - strand, within fucAat 2931.528 kb on + strand, within fucAat 2931.528 kb on + strand, within fucAat 2931.549 kb on + strand, within fucAat 2931.596 kb on + strand, within fucAat 2931.602 kb on - strand, within fucAat 2931.602 kb on - strand, within fucAat 2931.606 kb on - strand, within fucAat 2931.606 kb on - strand, within fucAat 2931.606 kb on - strand, within fucAat 2931.611 kb on + strand, within fucAat 2931.611 kb on + strand, within fucAat 2931.611 kb on + strand, within fucAat 2931.613 kb on + strand, within fucAat 2931.613 kb on + strand, within fucAat 2931.621 kb on + strand, within fucAat 2931.637 kb on + strand, within fucAat 2931.644 kb on - strand, within fucAat 2931.644 kb on - strand, within fucAat 2931.645 kb on - strand, within fucAat 2931.650 kb on - strandat 2931.650 kb on - strandat 2931.655 kb on - strandat 2931.673 kb on + strandat 2931.694 kb on + strandat 2931.694 kb on + strandat 2931.707 kb on + strandat 2931.711 kb on + strandat 2931.711 kb on + strandat 2931.711 kb on - strandat 2931.735 kb on - strandat 2931.735 kb on - strandat 2931.735 kb on - strandat 2931.748 kb on - strandat 2931.753 kb on + strandat 2931.762 kb on + strandat 2931.762 kb on + strandat 2931.764 kb on + strandat 2932.062 kb on - strandat 2932.091 kb on - strandat 2932.092 kb on - strandat 2932.099 kb on - strandat 2932.277 kb on + strandat 2932.638 kb on - strand, within fucPat 2932.652 kb on - strand, within fucPat 2932.652 kb on - strand, within fucPat 2932.652 kb on - strand, within fucPat 2932.696 kb on - strand, within fucP

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Benzethonium chloride 0.00003125 mM
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2,930,137 + fucO b2799 0.22 -1.3
2,930,161 + fucO b2799 0.24 -1.1
2,930,161 + fucO b2799 0.24 -0.8
2,930,189 - fucO b2799 0.26 +0.8
2,930,198 + fucO b2799 0.27 -1.3
2,930,215 - fucO b2799 0.29 -2.5
2,930,248 - fucO b2799 0.31 +1.7
2,930,280 + fucO b2799 0.34 +0.5
2,930,288 - fucO b2799 0.35 +1.6
2,930,298 - fucO b2799 0.36 -2.0
2,930,298 - fucO b2799 0.36 +2.5
2,930,362 + fucO b2799 0.41 +0.9
2,930,367 + fucO b2799 0.42 -3.2
2,930,406 - fucO b2799 0.45 -2.0
2,930,406 - fucO b2799 0.45 -0.9
2,930,417 + +0.2
2,930,427 + fucO b2799 0.47 -1.4
2,930,427 + fucO b2799 0.47 -0.9
2,930,622 - fucO b2799 0.64 +1.2
2,930,660 + fucO b2799 0.67 +0.6
2,930,676 + fucO b2799 0.69 +1.5
2,930,677 - fucO b2799 0.69 +0.9
2,930,806 - fucO b2799 0.80 -1.8
2,930,806 - fucO b2799 0.80 -0.8
2,930,832 - fucO b2799 0.82 +1.2
2,930,856 + fucO b2799 0.84 -0.8
2,930,872 - fucO b2799 0.86 -1.6
2,930,877 - fucO b2799 0.86 +0.8
2,930,877 - fucO b2799 0.86 -0.1
2,930,892 + fucO b2799 0.87 +1.2
2,931,131 + fucA b2800 0.10 -1.7
2,931,172 + fucA b2800 0.17 +1.0
2,931,349 - fucA b2800 0.44 -2.1
2,931,349 - fucA b2800 0.44 +0.1
2,931,381 + fucA b2800 0.49 +1.2
2,931,435 - fucA b2800 0.57 +0.7
2,931,489 - fucA b2800 0.66 +2.6
2,931,528 + fucA b2800 0.72 +0.2
2,931,528 + fucA b2800 0.72 -2.3
2,931,549 + fucA b2800 0.75 -1.4
2,931,596 + fucA b2800 0.82 +0.2
2,931,602 - fucA b2800 0.83 +0.9
2,931,602 - fucA b2800 0.83 -0.8
2,931,606 - fucA b2800 0.84 -2.1
2,931,606 - fucA b2800 0.84 -0.2
2,931,606 - fucA b2800 0.84 -0.1
2,931,611 + fucA b2800 0.85 -1.9
2,931,611 + fucA b2800 0.85 -0.8
2,931,611 + fucA b2800 0.85 -0.4
2,931,613 + fucA b2800 0.85 +1.0
2,931,613 + fucA b2800 0.85 -0.1
2,931,621 + fucA b2800 0.86 -2.0
2,931,637 + fucA b2800 0.89 -0.0
2,931,644 - fucA b2800 0.90 +0.2
2,931,644 - fucA b2800 0.90 -1.6
2,931,645 - fucA b2800 0.90 +1.2
2,931,650 - +2.2
2,931,650 - -0.4
2,931,655 - +1.2
2,931,673 + +0.2
2,931,694 + -0.8
2,931,694 + -0.4
2,931,707 + +1.6
2,931,711 + +1.2
2,931,711 + +1.2
2,931,711 - +1.2
2,931,735 - -2.0
2,931,735 - -1.8
2,931,735 - +1.2
2,931,748 - -1.4
2,931,753 + +2.1
2,931,762 + -2.7
2,931,762 + -0.8
2,931,764 + -0.8
2,932,062 - +1.7
2,932,091 - +1.4
2,932,092 - -1.3
2,932,099 - -1.1
2,932,277 + +1.2
2,932,638 - fucP b2801 0.29 -3.3
2,932,652 - fucP b2801 0.30 +0.4
2,932,652 - fucP b2801 0.30 -1.1
2,932,652 - fucP b2801 0.30 +1.4
2,932,696 - fucP b2801 0.33 -1.1

Or see this region's nucleotide sequence