Strain Fitness in Escherichia coli BW25113 around b2365

Experiment: LB Anaerobic with Benzethonium chloride 0.00003125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdsdC and dsdX are separated by 217 nucleotidesdsdX and dsdA are separated by 17 nucleotides b2364: dsdC - DNA-binding transcriptional dual regulator (NCBI), at 2,474,716 to 2,475,651 dsdC b2365: dsdX - predicted transporter (NCBI), at 2,475,869 to 2,477,206 dsdX b2366: dsdA - D-serine dehydratase (NCBI), at 2,477,224 to 2,478,552 dsdA Position (kb) 2475 2476 2477 2478Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2475.037 kb on - strand, within dsdCat 2475.057 kb on - strand, within dsdCat 2475.123 kb on - strand, within dsdCat 2475.188 kb on - strand, within dsdCat 2475.188 kb on - strand, within dsdCat 2475.231 kb on + strand, within dsdCat 2475.309 kb on + strand, within dsdCat 2475.312 kb on - strand, within dsdCat 2475.320 kb on + strand, within dsdCat 2475.382 kb on + strand, within dsdCat 2475.404 kb on - strand, within dsdCat 2475.477 kb on - strand, within dsdCat 2475.488 kb on + strand, within dsdCat 2475.568 kb on + strandat 2475.864 kb on + strandat 2475.880 kb on + strandat 2475.880 kb on + strandat 2476.007 kb on + strand, within dsdXat 2476.028 kb on - strand, within dsdXat 2476.287 kb on + strand, within dsdXat 2476.309 kb on - strand, within dsdXat 2476.316 kb on + strand, within dsdXat 2476.316 kb on + strand, within dsdXat 2476.438 kb on + strand, within dsdXat 2476.507 kb on - strand, within dsdXat 2476.507 kb on - strand, within dsdXat 2476.599 kb on - strand, within dsdXat 2476.628 kb on + strand, within dsdXat 2476.630 kb on + strand, within dsdXat 2476.642 kb on + strand, within dsdXat 2476.656 kb on + strand, within dsdXat 2476.656 kb on + strand, within dsdXat 2476.657 kb on + strand, within dsdXat 2476.684 kb on + strand, within dsdXat 2476.729 kb on + strand, within dsdXat 2476.729 kb on + strand, within dsdXat 2476.730 kb on + strand, within dsdXat 2476.730 kb on + strand, within dsdXat 2476.745 kb on - strand, within dsdXat 2476.870 kb on - strand, within dsdXat 2476.942 kb on + strand, within dsdXat 2476.979 kb on + strand, within dsdXat 2476.999 kb on - strand, within dsdXat 2476.999 kb on - strand, within dsdXat 2477.071 kb on - strand, within dsdXat 2477.098 kb on + strandat 2477.114 kb on - strandat 2477.114 kb on - strandat 2477.116 kb on - strandat 2477.131 kb on + strandat 2477.267 kb on - strandat 2477.298 kb on - strandat 2477.298 kb on - strandat 2477.311 kb on - strandat 2477.538 kb on - strand, within dsdAat 2477.538 kb on - strand, within dsdAat 2477.793 kb on - strand, within dsdAat 2477.847 kb on - strand, within dsdAat 2477.865 kb on + strand, within dsdAat 2477.865 kb on + strand, within dsdAat 2477.905 kb on - strand, within dsdAat 2478.025 kb on + strand, within dsdAat 2478.059 kb on + strand, within dsdAat 2478.092 kb on + strand, within dsdAat 2478.154 kb on + strand, within dsdA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Benzethonium chloride 0.00003125 mM
remove
2,475,037 - dsdC b2364 0.34 -0.7
2,475,057 - dsdC b2364 0.36 -1.6
2,475,123 - dsdC b2364 0.43 +1.1
2,475,188 - dsdC b2364 0.50 -0.5
2,475,188 - dsdC b2364 0.50 -3.2
2,475,231 + dsdC b2364 0.55 +0.4
2,475,309 + dsdC b2364 0.63 -0.9
2,475,312 - dsdC b2364 0.64 -0.0
2,475,320 + dsdC b2364 0.65 -1.2
2,475,382 + dsdC b2364 0.71 -2.1
2,475,404 - dsdC b2364 0.74 -0.2
2,475,477 - dsdC b2364 0.81 -0.5
2,475,488 + dsdC b2364 0.82 +1.1
2,475,568 + -0.5
2,475,864 + +2.2
2,475,880 + -0.6
2,475,880 + +0.4
2,476,007 + dsdX b2365 0.10 -2.2
2,476,028 - dsdX b2365 0.12 +2.0
2,476,287 + dsdX b2365 0.31 -1.5
2,476,309 - dsdX b2365 0.33 -0.7
2,476,316 + dsdX b2365 0.33 +1.3
2,476,316 + dsdX b2365 0.33 -0.1
2,476,438 + dsdX b2365 0.43 +3.3
2,476,507 - dsdX b2365 0.48 -0.5
2,476,507 - dsdX b2365 0.48 -0.5
2,476,599 - dsdX b2365 0.55 +1.0
2,476,628 + dsdX b2365 0.57 +1.0
2,476,630 + dsdX b2365 0.57 +0.3
2,476,642 + dsdX b2365 0.58 -1.9
2,476,656 + dsdX b2365 0.59 -0.5
2,476,656 + dsdX b2365 0.59 -1.9
2,476,657 + dsdX b2365 0.59 +1.1
2,476,684 + dsdX b2365 0.61 +2.1
2,476,729 + dsdX b2365 0.64 -1.2
2,476,729 + dsdX b2365 0.64 -0.6
2,476,730 + dsdX b2365 0.64 -1.2
2,476,730 + dsdX b2365 0.64 +2.6
2,476,745 - dsdX b2365 0.65 +0.7
2,476,870 - dsdX b2365 0.75 -0.5
2,476,942 + dsdX b2365 0.80 +0.5
2,476,979 + dsdX b2365 0.83 +1.8
2,476,999 - dsdX b2365 0.84 -1.2
2,476,999 - dsdX b2365 0.84 +1.2
2,477,071 - dsdX b2365 0.90 -0.0
2,477,098 + +0.0
2,477,114 - -1.6
2,477,114 - +2.2
2,477,116 - +1.9
2,477,131 + +0.1
2,477,267 - -2.6
2,477,298 - -0.9
2,477,298 - +1.1
2,477,311 - -2.4
2,477,538 - dsdA b2366 0.24 +0.1
2,477,538 - dsdA b2366 0.24 +0.1
2,477,793 - dsdA b2366 0.43 +1.1
2,477,847 - dsdA b2366 0.47 +4.1
2,477,865 + dsdA b2366 0.48 +1.9
2,477,865 + dsdA b2366 0.48 -0.5
2,477,905 - dsdA b2366 0.51 +1.1
2,478,025 + dsdA b2366 0.60 +1.4
2,478,059 + dsdA b2366 0.63 -2.2
2,478,092 + dsdA b2366 0.65 +0.8
2,478,154 + dsdA b2366 0.70 +1.4

Or see this region's nucleotide sequence