Strain Fitness in Escherichia coli BW25113 around b2190

Experiment: LB Anaerobic with Benzethonium chloride 0.00003125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyejM and proL are separated by 74 nucleotidesproL and yejO are separated by 102 nucleotidesyejO and insH-8 are separated by 150 nucleotides b2188: yejM - predicted hydrolase, inner membrane (NCBI), at 2,282,398 to 2,284,158 yejM b2189: proL - tRNA-Pro (NCBI), at 2,284,233 to 2,284,309 proL b2190: yejO - predicted autotransporter outer membrane protein (RefSeq), at 2,284,412 to 2,286,936 yejO b2192: insH-8 - IS5 transposase and trans-activator (NCBI), at 2,287,087 to 2,288,103 insH-8 Position (kb) 2284 2285 2286 2287Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2283.474 kb on - strand, within yejMat 2283.688 kb on + strand, within yejMat 2283.688 kb on + strand, within yejMat 2283.712 kb on - strand, within yejMat 2283.752 kb on + strand, within yejMat 2283.752 kb on + strand, within yejMat 2283.752 kb on + strand, within yejMat 2283.758 kb on - strand, within yejMat 2283.760 kb on - strand, within yejMat 2283.789 kb on + strand, within yejMat 2283.797 kb on + strand, within yejMat 2283.875 kb on + strand, within yejMat 2283.875 kb on + strand, within yejMat 2283.900 kb on - strand, within yejMat 2283.910 kb on - strand, within yejMat 2283.917 kb on - strand, within yejMat 2283.980 kb on - strand, within yejMat 2284.005 kb on + strandat 2284.005 kb on + strandat 2284.005 kb on + strandat 2284.051 kb on - strandat 2284.051 kb on - strandat 2284.056 kb on - strandat 2284.205 kb on + strandat 2284.255 kb on - strand, within proLat 2284.384 kb on - strandat 2284.395 kb on - strandat 2284.454 kb on + strandat 2284.454 kb on + strandat 2284.462 kb on - strandat 2284.479 kb on - strandat 2284.506 kb on + strandat 2284.528 kb on - strandat 2284.528 kb on - strandat 2284.606 kb on - strandat 2284.606 kb on - strandat 2284.667 kb on + strand, within yejOat 2284.704 kb on + strand, within yejOat 2284.729 kb on - strand, within yejOat 2284.729 kb on - strand, within yejOat 2284.748 kb on - strand, within yejOat 2284.755 kb on - strand, within yejOat 2284.764 kb on - strand, within yejOat 2284.764 kb on - strand, within yejOat 2284.795 kb on - strand, within yejOat 2284.795 kb on - strand, within yejOat 2284.796 kb on - strand, within yejOat 2284.796 kb on - strand, within yejOat 2284.932 kb on + strand, within yejOat 2284.982 kb on - strand, within yejOat 2284.982 kb on - strand, within yejOat 2284.993 kb on + strand, within yejOat 2285.000 kb on + strand, within yejOat 2285.001 kb on - strand, within yejOat 2285.126 kb on + strand, within yejOat 2285.258 kb on - strand, within yejOat 2285.265 kb on - strandat 2285.265 kb on - strand, within yejOat 2285.369 kb on - strand, within yejOat 2285.374 kb on - strand, within yejOat 2285.383 kb on - strand, within yejOat 2285.383 kb on - strand, within yejOat 2285.443 kb on + strand, within yejOat 2285.458 kb on + strand, within yejOat 2285.458 kb on + strand, within yejOat 2285.458 kb on + strand, within yejOat 2285.458 kb on + strand, within yejOat 2285.458 kb on + strand, within yejOat 2285.458 kb on + strand, within yejOat 2285.466 kb on - strand, within yejOat 2285.466 kb on - strand, within yejOat 2285.490 kb on - strand, within yejOat 2285.546 kb on - strand, within yejOat 2285.546 kb on - strand, within yejOat 2285.546 kb on - strand, within yejOat 2285.570 kb on + strand, within yejOat 2285.604 kb on - strand, within yejOat 2285.650 kb on + strand, within yejOat 2285.669 kb on - strand, within yejOat 2285.737 kb on - strand, within yejOat 2285.774 kb on + strand, within yejOat 2285.899 kb on + strand, within yejOat 2285.938 kb on + strand, within yejOat 2285.938 kb on + strand, within yejOat 2286.026 kb on - strand, within yejOat 2286.042 kb on + strand, within yejOat 2286.052 kb on - strand, within yejOat 2286.102 kb on + strand, within yejOat 2286.118 kb on + strand, within yejOat 2286.121 kb on + strand, within yejOat 2286.121 kb on - strand, within yejOat 2286.121 kb on - strand, within yejOat 2286.165 kb on - strand, within yejOat 2286.165 kb on - strand, within yejOat 2286.301 kb on - strand, within yejOat 2286.302 kb on - strand, within yejOat 2286.319 kb on + strand, within yejOat 2286.327 kb on - strand, within yejOat 2286.330 kb on + strandat 2286.430 kb on - strand, within yejOat 2286.432 kb on + strand, within yejOat 2286.462 kb on + strandat 2286.470 kb on - strand, within yejOat 2286.470 kb on - strand, within yejOat 2286.531 kb on + strand, within yejOat 2286.532 kb on + strand, within yejOat 2286.541 kb on + strand, within yejOat 2286.554 kb on + strand, within yejOat 2286.554 kb on + strand, within yejOat 2286.573 kb on - strand, within yejOat 2286.621 kb on + strand, within yejOat 2286.623 kb on + strand, within yejOat 2286.623 kb on + strand, within yejOat 2286.631 kb on - strand, within yejOat 2286.643 kb on + strand, within yejOat 2286.644 kb on - strand, within yejOat 2286.654 kb on + strand, within yejOat 2286.654 kb on + strand, within yejOat 2286.676 kb on - strand, within yejOat 2286.681 kb on - strand, within yejOat 2286.681 kb on - strand, within yejOat 2286.725 kb on + strandat 2286.750 kb on + strandat 2286.751 kb on - strandat 2286.751 kb on - strandat 2286.878 kb on - strandat 2286.880 kb on - strandat 2286.885 kb on - strandat 2286.888 kb on - strandat 2286.888 kb on - strandat 2286.890 kb on - strandat 2286.892 kb on - strandat 2286.892 kb on - strandat 2286.892 kb on - strandat 2286.892 kb on - strandat 2286.892 kb on - strandat 2286.901 kb on - strandat 2286.901 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.902 kb on - strandat 2286.912 kb on - strandat 2286.912 kb on - strandat 2286.924 kb on - strandat 2286.931 kb on - strandat 2286.931 kb on - strandat 2286.943 kb on - strandat 2286.943 kb on - strandat 2286.975 kb on - strandat 2286.975 kb on - strandat 2286.980 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Benzethonium chloride 0.00003125 mM
remove
2,283,474 - yejM b2188 0.61 -2.1
2,283,688 + yejM b2188 0.73 -2.5
2,283,688 + yejM b2188 0.73 -3.2
2,283,712 - yejM b2188 0.75 -1.7
2,283,752 + yejM b2188 0.77 -1.9
2,283,752 + yejM b2188 0.77 -2.2
2,283,752 + yejM b2188 0.77 -3.2
2,283,758 - yejM b2188 0.77 -1.3
2,283,760 - yejM b2188 0.77 +0.1
2,283,789 + yejM b2188 0.79 -3.2
2,283,797 + yejM b2188 0.79 -3.3
2,283,875 + yejM b2188 0.84 -3.2
2,283,875 + yejM b2188 0.84 -1.5
2,283,900 - yejM b2188 0.85 -2.5
2,283,910 - yejM b2188 0.86 -1.9
2,283,917 - yejM b2188 0.86 -3.4
2,283,980 - yejM b2188 0.90 -1.7
2,284,005 + -0.9
2,284,005 + -0.5
2,284,005 + -2.3
2,284,051 - -1.5
2,284,051 - -1.9
2,284,056 - -0.5
2,284,205 + -0.5
2,284,255 - proL b2189 0.29 -1.5
2,284,384 - +0.1
2,284,395 - +0.1
2,284,454 + +1.2
2,284,454 + +0.1
2,284,462 - -2.9
2,284,479 - -1.1
2,284,506 + -0.2
2,284,528 - +1.3
2,284,528 - +0.4
2,284,606 - -0.4
2,284,606 - +2.7
2,284,667 + yejO b2190 0.10 +1.1
2,284,704 + yejO b2190 0.12 -2.6
2,284,729 - yejO b2190 0.13 +0.2
2,284,729 - yejO b2190 0.13 -1.0
2,284,748 - yejO b2190 0.13 +0.8
2,284,755 - yejO b2190 0.14 +0.1
2,284,764 - yejO b2190 0.14 -2.4
2,284,764 - yejO b2190 0.14 -2.7
2,284,795 - yejO b2190 0.15 -0.4
2,284,795 - yejO b2190 0.15 +1.7
2,284,796 - yejO b2190 0.15 +2.4
2,284,796 - yejO b2190 0.15 -0.4
2,284,932 + yejO b2190 0.21 -1.5
2,284,982 - yejO b2190 0.23 +0.5
2,284,982 - yejO b2190 0.23 -1.3
2,284,993 + yejO b2190 0.23 +1.5
2,285,000 + yejO b2190 0.23 -2.6
2,285,001 - yejO b2190 0.23 -0.4
2,285,126 + yejO b2190 0.28 -1.7
2,285,258 - yejO b2190 0.34 -0.7
2,285,265 - +0.1
2,285,265 - yejO b2190 0.34 -1.1
2,285,369 - yejO b2190 0.38 +0.5
2,285,374 - yejO b2190 0.38 -0.7
2,285,383 - yejO b2190 0.38 +0.7
2,285,383 - yejO b2190 0.38 -3.6
2,285,443 + yejO b2190 0.41 -1.5
2,285,458 + yejO b2190 0.41 -3.7
2,285,458 + yejO b2190 0.41 -1.9
2,285,458 + yejO b2190 0.41 +1.1
2,285,458 + yejO b2190 0.41 -1.5
2,285,458 + yejO b2190 0.41 +4.0
2,285,458 + yejO b2190 0.41 -0.1
2,285,466 - yejO b2190 0.42 -0.9
2,285,466 - yejO b2190 0.42 -1.1
2,285,490 - yejO b2190 0.43 -0.9
2,285,546 - yejO b2190 0.45 -0.9
2,285,546 - yejO b2190 0.45 -2.3
2,285,546 - yejO b2190 0.45 +0.0
2,285,570 + yejO b2190 0.46 -0.9
2,285,604 - yejO b2190 0.47 +2.9
2,285,650 + yejO b2190 0.49 +0.3
2,285,669 - yejO b2190 0.50 -1.7
2,285,737 - yejO b2190 0.52 +0.7
2,285,774 + yejO b2190 0.54 +0.8
2,285,899 + yejO b2190 0.59 -0.5
2,285,938 + yejO b2190 0.60 +0.1
2,285,938 + yejO b2190 0.60 -0.9
2,286,026 - yejO b2190 0.64 -1.7
2,286,042 + yejO b2190 0.65 +1.4
2,286,052 - yejO b2190 0.65 -1.7
2,286,102 + yejO b2190 0.67 +0.1
2,286,118 + yejO b2190 0.68 -1.5
2,286,121 + yejO b2190 0.68 -0.9
2,286,121 - yejO b2190 0.68 +1.6
2,286,121 - yejO b2190 0.68 -0.9
2,286,165 - yejO b2190 0.69 +1.1
2,286,165 - yejO b2190 0.69 -0.5
2,286,301 - yejO b2190 0.75 -0.5
2,286,302 - yejO b2190 0.75 +1.1
2,286,319 + yejO b2190 0.76 +1.1
2,286,327 - yejO b2190 0.76 +1.1
2,286,330 + +0.5
2,286,430 - yejO b2190 0.80 -0.5
2,286,432 + yejO b2190 0.80 +1.1
2,286,462 + -0.6
2,286,470 - yejO b2190 0.82 -1.3
2,286,470 - yejO b2190 0.82 +1.1
2,286,531 + yejO b2190 0.84 +1.1
2,286,532 + yejO b2190 0.84 +1.1
2,286,541 + yejO b2190 0.84 +1.1
2,286,554 + yejO b2190 0.85 +0.1
2,286,554 + yejO b2190 0.85 -0.5
2,286,573 - yejO b2190 0.86 -2.7
2,286,621 + yejO b2190 0.87 -2.1
2,286,623 + yejO b2190 0.88 +0.1
2,286,623 + yejO b2190 0.88 -0.9
2,286,631 - yejO b2190 0.88 +2.1
2,286,643 + yejO b2190 0.88 -2.7
2,286,644 - yejO b2190 0.88 +0.1
2,286,654 + yejO b2190 0.89 +1.1
2,286,654 + yejO b2190 0.89 +0.1
2,286,676 - yejO b2190 0.90 -1.5
2,286,681 - yejO b2190 0.90 +1.1
2,286,681 - yejO b2190 0.90 +0.1
2,286,725 + -1.5
2,286,750 + +0.1
2,286,751 - +1.1
2,286,751 - +1.1
2,286,878 - +1.3
2,286,880 - +0.5
2,286,885 - -2.1
2,286,888 - -0.3
2,286,888 - -0.7
2,286,890 - -2.0
2,286,892 - +0.3
2,286,892 - -2.5
2,286,892 - -0.2
2,286,892 - -1.9
2,286,892 - +0.5
2,286,901 - -1.3
2,286,901 - -2.3
2,286,902 - -2.7
2,286,902 - -0.2
2,286,902 - +2.4
2,286,902 - +0.4
2,286,902 - +0.1
2,286,902 - +2.1
2,286,902 - -2.6
2,286,902 - +2.1
2,286,902 - -1.3
2,286,902 - +0.8
2,286,902 - -1.5
2,286,912 - -2.8
2,286,912 - -0.2
2,286,924 - -1.9
2,286,931 - +0.3
2,286,931 - +0.7
2,286,943 - -2.8
2,286,943 - +1.1
2,286,975 - -1.1
2,286,975 - -1.5
2,286,980 - +2.6

Or see this region's nucleotide sequence