Strain Fitness in Escherichia coli BW25113 around b4588

Experiment: LB Anaerobic with 8-hydroxy-nitroquinoline 0.0000025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with 8-hydroxy-nitroquinoline 0.0000025 mM
570,625	+				+0.1
570,644	+				-0.3
570,650	+				-0.3
570,650	+				-0.0
570,661	+				+0.0
570,665	-				+0.7
570,668	+				-0.3
570,668	+				-0.3
570,672	+				+0.3
570,675	-				+0.7
570,675	-				+0.7
570,675	-				+0.7
570,682	+				+0.7
570,682	+				+1.7
570,688	+				+0.7
570,688	+				+0.7
570,697	-				+0.7
570,772	+	ybcM	b0546	0.12	-0.7
570,772	+	ybcM	b0546	0.12	-0.4
570,804	+	ybcM	b0546	0.16	+0.4
570,804	+	ybcM	b0546	0.16	-0.7
570,804	+	ybcM	b0546	0.16	-0.6
570,804	+	ybcM	b0546	0.16	+0.5
570,804	+	ybcM	b0546	0.16	-0.9
570,817	+	ybcM	b0546	0.18	-0.4
570,896	+	ybcM	b0546	0.27	+0.7
570,992	+	ybcM	b0546	0.39	+0.7
570,992	+	ybcM	b0546	0.39	-0.3
571,055	+	ybcM	b0546	0.47	+0.7
571,084	-	ybcM	b0546	0.51	+0.7
571,094	-	ybcM	b0546	0.52	+0.7
571,105	+	ybcM	b0546	0.54	+0.7
571,115	+	ybcM	b0546	0.55	+0.7
571,124	-	ybcM	b0546	0.56	+0.7
571,130	-	ybcM	b0546	0.57	+0.7
571,170	-	ybcM	b0546	0.62	+0.7
571,186	+	ybcM	b0546	0.64	-0.3
571,207	+	ybcM	b0546	0.66	+0.7
571,207	+	ybcM	b0546	0.66	+0.7
571,215	-	ybcM	b0546	0.67	+0.7
571,226	+	ybcM	b0546	0.69	-0.9
571,283	+	ybcM	b0546	0.76	-0.5
571,301	+	ybcM	b0546	0.78	-0.3
571,301	+	ybcM	b0546	0.78	+0.7
571,306	+	ybcM	b0546	0.79	-2.1
571,340	+	ybcM	b0546	0.83	+0.7
571,340	+	ybcM	b0546	0.83	-0.3
571,340	+	ybcM	b0546	0.83	-0.3
571,340	+	ybcM	b0546	0.83	-0.9
571,341	-	ybcM	b0546	0.83	+0.7
571,345	-	ybcM	b0546	0.84	+0.7
571,358	-	ybcM	b0546	0.85	+0.7
571,418	+				+0.9
571,427	+				-0.3
571,477	-				+0.7
571,486	-				+0.7
571,546	-				-0.3
571,560	-				+0.1
571,575	-				+0.7
571,575	-				-1.6
571,585	-				+0.1
571,596	+				+0.7
571,596	-				+0.3
571,596	-				-0.3
571,602	-	ylcH	b4588	0.11	+0.7
571,618	+	ylcH	b4588	0.26	+0.7
571,623	-	ylcH	b4588	0.31	-0.5
571,629	+	ylcH	b4588	0.37	-0.5
571,638	-	ylcH	b4588	0.46	+0.6
571,671	+	ylcH	b4588	0.78	+1.0
571,681	+	ylcH	b4588	0.88	-1.3
571,681	+	ylcH	b4588	0.88	+1.5
571,682	-				-0.8
571,682	-				+0.3
571,682	-				+0.7
571,682	-				-0.3
571,682	-				-0.0
571,682	-				+0.2
571,682	-				-0.3
571,687	+				-0.3
571,694	-				+1.3
571,695	-				-1.3
571,752	+	ybcN	b0547	0.14	+0.3
571,752	+	ybcN	b0547	0.14	-0.3
571,909	+	ybcN	b0547	0.48	-0.6
571,931	+	ybcN	b0547	0.53	+0.1
571,937	-	ybcN	b0547	0.54	-0.2
571,939	-	ybcN	b0547	0.55	+0.8
571,939	-	ybcN	b0547	0.55	+0.3
572,055	+	ybcN	b0547	0.80	-0.1
572,068	-	ybcN	b0547	0.83	-0.1
572,179	+	ninE	b0548	0.20	-0.7
572,179	+	ninE	b0548	0.20	-0.9
572,179	+	ninE	b0548	0.20	-0.7
572,195	-	ninE	b0548	0.30	-0.2
572,214	-	ninE	b0548	0.41	+0.2
572,343	-	ybcO	b0549	0.12	+0.7
572,557	-	ybcO	b0549	0.86	-0.4
572,617	+				-1.1
572,625	-				+0.6
572,679	-	rusA	b0550	0.23	+2.0
572,679	-	rusA	b0550	0.23	+0.1