Experiment: LB Anaerobic with Zinc Pyrithione 0.00000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemN and yshB are separated by 228 nucleotides yshB and glnG are separated by 111 nucleotides
b3867: hemN - O2-independent coproporphyrinogen III oxidase (VIMSS), at 4,050,068 to 4,051,441
hemN
b4686: yshB - expressed protein (RefSeq), at 4,051,670 to 4,051,780
yshB
b3868: glnG - fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI), at 4,051,892 to 4,053,301
glnG
Position (kb)
4051
4052 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4050.674 kb on - strand, within hemN at 4050.683 kb on + strand, within hemN at 4050.683 kb on + strand, within hemN at 4050.742 kb on + strand, within hemN at 4050.782 kb on + strand, within hemN at 4050.783 kb on - strand, within hemN at 4050.783 kb on - strand, within hemN at 4050.783 kb on - strand, within hemN at 4050.988 kb on - strand, within hemN at 4050.998 kb on - strand, within hemN at 4051.005 kb on + strand, within hemN at 4051.005 kb on + strand, within hemN at 4051.008 kb on - strand, within hemN at 4051.018 kb on - strand, within hemN at 4051.030 kb on + strand, within hemN at 4051.043 kb on - strand, within hemN at 4051.043 kb on - strand, within hemN at 4051.069 kb on + strand, within hemN at 4051.081 kb on + strand, within hemN at 4051.089 kb on - strand, within hemN at 4051.089 kb on - strand, within hemN at 4051.091 kb on - strand, within hemN at 4051.107 kb on + strand, within hemN at 4051.133 kb on + strand, within hemN at 4051.154 kb on - strand, within hemN at 4051.154 kb on - strand, within hemN at 4051.185 kb on + strand, within hemN at 4051.185 kb on + strand, within hemN at 4051.216 kb on + strand, within hemN at 4051.224 kb on - strand, within hemN at 4051.229 kb on + strand, within hemN at 4051.229 kb on + strand, within hemN at 4051.275 kb on + strand, within hemN at 4051.418 kb on + strand at 4051.418 kb on + strand at 4051.499 kb on + strand at 4051.613 kb on - strand at 4051.613 kb on - strand at 4051.628 kb on - strand at 4051.679 kb on - strand at 4051.679 kb on - strand at 4051.692 kb on + strand, within yshB at 4051.726 kb on + strand, within yshB at 4051.726 kb on + strand, within yshB at 4051.730 kb on + strand, within yshB at 4051.741 kb on - strand, within yshB at 4051.808 kb on + strand at 4051.894 kb on + strand at 4051.894 kb on + strand at 4051.909 kb on + strand at 4051.909 kb on + strand at 4051.909 kb on - strand at 4051.929 kb on + strand at 4051.941 kb on + strand at 4052.012 kb on + strand at 4052.015 kb on - strand at 4052.126 kb on + strand, within glnG at 4052.126 kb on + strand, within glnG at 4052.197 kb on - strand, within glnG at 4052.255 kb on + strand, within glnG at 4052.328 kb on - strand, within glnG at 4052.423 kb on + strand, within glnG at 4052.423 kb on + strand, within glnG at 4052.497 kb on + strand, within glnG at 4052.497 kb on + strand, within glnG at 4052.614 kb on + strand, within glnG at 4052.688 kb on + strand, within glnG at 4052.712 kb on + strand, within glnG at 4052.769 kb on - strand, within glnG
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Zinc Pyrithione 0.00000125 mM remove 4,050,674 - hemN b3867 0.44 -0.6 4,050,683 + hemN b3867 0.45 +0.4 4,050,683 + hemN b3867 0.45 -0.1 4,050,742 + hemN b3867 0.49 +0.2 4,050,782 + hemN b3867 0.52 +0.2 4,050,783 - hemN b3867 0.52 +0.2 4,050,783 - hemN b3867 0.52 -1.1 4,050,783 - hemN b3867 0.52 -0.6 4,050,988 - hemN b3867 0.67 +0.7 4,050,998 - hemN b3867 0.68 +0.1 4,051,005 + hemN b3867 0.68 -0.0 4,051,005 + hemN b3867 0.68 -0.5 4,051,008 - hemN b3867 0.68 -1.4 4,051,018 - hemN b3867 0.69 +0.9 4,051,030 + hemN b3867 0.70 +0.1 4,051,043 - hemN b3867 0.71 -0.7 4,051,043 - hemN b3867 0.71 +0.2 4,051,069 + hemN b3867 0.73 -0.1 4,051,081 + hemN b3867 0.74 -0.2 4,051,089 - hemN b3867 0.74 +0.7 4,051,089 - hemN b3867 0.74 +0.5 4,051,091 - hemN b3867 0.74 +0.0 4,051,107 + hemN b3867 0.76 -0.3 4,051,133 + hemN b3867 0.78 -1.9 4,051,154 - hemN b3867 0.79 +0.1 4,051,154 - hemN b3867 0.79 +0.6 4,051,185 + hemN b3867 0.81 +0.1 4,051,185 + hemN b3867 0.81 +0.1 4,051,216 + hemN b3867 0.84 +0.4 4,051,224 - hemN b3867 0.84 -1.2 4,051,229 + hemN b3867 0.84 +0.1 4,051,229 + hemN b3867 0.84 -0.5 4,051,275 + hemN b3867 0.88 -0.6 4,051,418 + -0.5 4,051,418 + -0.8 4,051,499 + -0.8 4,051,613 - +0.0 4,051,613 - -0.2 4,051,628 - +0.4 4,051,679 - +0.4 4,051,679 - -0.6 4,051,692 + yshB b4686 0.20 -0.3 4,051,726 + yshB b4686 0.50 -2.4 4,051,726 + yshB b4686 0.50 -0.3 4,051,730 + yshB b4686 0.54 -1.4 4,051,741 - yshB b4686 0.64 -1.6 4,051,808 + +0.2 4,051,894 + -0.1 4,051,894 + -1.1 4,051,909 + -1.1 4,051,909 + +0.4 4,051,909 - +0.4 4,051,929 + +1.8 4,051,941 + +0.5 4,052,012 + -0.1 4,052,015 - -0.1 4,052,126 + glnG b3868 0.17 -0.5 4,052,126 + glnG b3868 0.17 +2.1 4,052,197 - glnG b3868 0.22 +0.5 4,052,255 + glnG b3868 0.26 -0.6 4,052,328 - glnG b3868 0.31 -0.1 4,052,423 + glnG b3868 0.38 +1.7 4,052,423 + glnG b3868 0.38 -1.6 4,052,497 + glnG b3868 0.43 +0.1 4,052,497 + glnG b3868 0.43 +1.2 4,052,614 + glnG b3868 0.51 -0.6 4,052,688 + glnG b3868 0.56 -0.6 4,052,712 + glnG b3868 0.58 +0.7 4,052,769 - glnG b3868 0.62 +0.1
Or see this region's nucleotide sequence