Strain Fitness in Escherichia coli BW25113 around b2250

Experiment: LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaY and b2250 are separated by 99 nucleotidesb2250 and yfaO are separated by 278 nucleotidesyfaO and ais are separated by 38 nucleotides b2249: yfaY - competence damage-inducible protein A (NCBI), at 2,360,453 to 2,361,655 yfaY b2250: b2250 - orf, hypothetical protein (VIMSS), at 2,361,755 to 2,362,297 b2250 b2251: yfaO - predicted NUDIX hydrolase (NCBI), at 2,362,576 to 2,363,001 yfaO b2252: ais - hypothetical protein (NCBI), at 2,363,040 to 2,363,642 ais Position (kb) 2361 2362 2363Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2360.855 kb on - strand, within yfaYat 2360.855 kb on - strand, within yfaYat 2360.896 kb on + strand, within yfaYat 2361.049 kb on + strand, within yfaYat 2361.057 kb on - strand, within yfaYat 2361.100 kb on - strand, within yfaYat 2361.100 kb on - strand, within yfaYat 2361.200 kb on + strand, within yfaYat 2361.257 kb on + strand, within yfaYat 2361.301 kb on + strand, within yfaYat 2361.512 kb on + strand, within yfaYat 2361.512 kb on + strand, within yfaYat 2361.518 kb on - strand, within yfaYat 2361.518 kb on - strand, within yfaYat 2361.596 kb on - strandat 2361.712 kb on + strandat 2361.815 kb on + strand, within b2250at 2361.860 kb on + strand, within b2250at 2361.869 kb on - strand, within b2250at 2361.869 kb on - strand, within b2250at 2361.926 kb on - strand, within b2250at 2362.040 kb on + strand, within b2250at 2362.209 kb on + strand, within b2250at 2362.214 kb on + strand, within b2250at 2362.221 kb on + strand, within b2250at 2362.239 kb on - strand, within b2250at 2362.244 kb on - strandat 2362.244 kb on - strandat 2362.246 kb on + strandat 2362.307 kb on + strandat 2362.307 kb on + strandat 2362.316 kb on - strandat 2362.345 kb on + strandat 2362.345 kb on + strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.351 kb on - strandat 2362.353 kb on + strandat 2362.353 kb on + strandat 2362.353 kb on + strandat 2362.353 kb on + strandat 2362.353 kb on + strandat 2362.353 kb on + strandat 2362.357 kb on + strandat 2362.361 kb on + strandat 2362.361 kb on - strandat 2362.361 kb on - strandat 2362.361 kb on - strandat 2362.361 kb on - strandat 2362.361 kb on - strandat 2362.361 kb on - strandat 2362.361 kb on - strandat 2362.365 kb on - strandat 2362.366 kb on + strandat 2362.366 kb on + strandat 2362.399 kb on + strandat 2362.475 kb on + strandat 2362.486 kb on - strandat 2362.488 kb on - strandat 2362.488 kb on - strandat 2362.528 kb on + strandat 2362.531 kb on - strandat 2362.533 kb on + strandat 2362.534 kb on + strandat 2362.534 kb on + strandat 2362.541 kb on - strandat 2362.586 kb on + strandat 2362.590 kb on - strandat 2362.590 kb on - strandat 2362.591 kb on + strandat 2362.599 kb on - strandat 2362.599 kb on - strandat 2362.600 kb on - strandat 2362.600 kb on - strandat 2362.601 kb on - strandat 2362.601 kb on - strandat 2362.634 kb on + strand, within yfaOat 2362.688 kb on - strand, within yfaOat 2362.691 kb on + strand, within yfaOat 2362.691 kb on + strand, within yfaOat 2362.691 kb on + strand, within yfaOat 2362.691 kb on + strand, within yfaOat 2362.691 kb on + strand, within yfaOat 2362.699 kb on - strand, within yfaOat 2362.757 kb on + strand, within yfaOat 2362.772 kb on + strand, within yfaOat 2362.772 kb on + strand, within yfaOat 2362.815 kb on + strand, within yfaOat 2362.815 kb on + strand, within yfaOat 2362.822 kb on - strand, within yfaOat 2362.822 kb on - strand, within yfaOat 2362.919 kb on - strand, within yfaOat 2362.931 kb on - strand, within yfaOat 2362.994 kb on + strandat 2363.002 kb on + strandat 2363.002 kb on + strandat 2363.003 kb on + strandat 2363.008 kb on + strandat 2363.008 kb on + strandat 2363.082 kb on + strandat 2363.082 kb on + strandat 2363.084 kb on + strandat 2363.088 kb on + strandat 2363.093 kb on + strandat 2363.093 kb on + strandat 2363.126 kb on - strand, within aisat 2363.142 kb on - strand, within aisat 2363.153 kb on + strand, within aisat 2363.244 kb on + strand, within aisat 2363.244 kb on + strand, within aisat 2363.275 kb on + strand, within aisat 2363.275 kb on + strand, within ais

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM
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2,360,855 - yfaY b2249 0.33 -3.2
2,360,855 - yfaY b2249 0.33 -0.1
2,360,896 + yfaY b2249 0.37 -0.2
2,361,049 + yfaY b2249 0.50 -0.2
2,361,057 - yfaY b2249 0.50 +0.0
2,361,100 - yfaY b2249 0.54 -0.1
2,361,100 - yfaY b2249 0.54 +0.1
2,361,200 + yfaY b2249 0.62 -0.3
2,361,257 + yfaY b2249 0.67 +0.6
2,361,301 + yfaY b2249 0.70 +0.1
2,361,512 + yfaY b2249 0.88 -1.1
2,361,512 + yfaY b2249 0.88 +1.0
2,361,518 - yfaY b2249 0.89 +0.5
2,361,518 - yfaY b2249 0.89 +0.7
2,361,596 - +1.3
2,361,712 + +0.1
2,361,815 + b2250 b2250 0.11 +1.1
2,361,860 + b2250 b2250 0.19 -1.5
2,361,869 - b2250 b2250 0.21 -0.7
2,361,869 - b2250 b2250 0.21 +0.5
2,361,926 - b2250 b2250 0.31 -1.0
2,362,040 + b2250 b2250 0.52 -1.8
2,362,209 + b2250 b2250 0.84 -0.2
2,362,214 + b2250 b2250 0.85 -1.8
2,362,221 + b2250 b2250 0.86 -0.9
2,362,239 - b2250 b2250 0.89 -2.1
2,362,244 - +0.8
2,362,244 - -1.0
2,362,246 + -0.2
2,362,307 + +0.5
2,362,307 + +1.1
2,362,316 - +0.5
2,362,345 + +0.1
2,362,345 + -0.9
2,362,351 - +0.2
2,362,351 - -1.5
2,362,351 - -0.0
2,362,351 - +0.2
2,362,351 - -0.7
2,362,351 - +0.6
2,362,351 - +0.0
2,362,351 - -0.4
2,362,351 - -1.8
2,362,351 - +0.2
2,362,353 + +0.5
2,362,353 + +0.5
2,362,353 + +0.1
2,362,353 + +0.5
2,362,353 + +0.9
2,362,353 + +0.4
2,362,357 + +0.6
2,362,361 + -0.7
2,362,361 - +0.5
2,362,361 - -0.6
2,362,361 - +1.5
2,362,361 - +3.1
2,362,361 - +0.2
2,362,361 - +0.5
2,362,361 - +0.5
2,362,365 - +2.8
2,362,366 + -0.1
2,362,366 + +1.7
2,362,399 + +1.2
2,362,475 + -0.7
2,362,486 - +0.5
2,362,488 - +0.5
2,362,488 - +0.5
2,362,528 + -0.1
2,362,531 - +0.5
2,362,533 + +0.5
2,362,534 + -0.1
2,362,534 + -0.2
2,362,541 - -0.1
2,362,586 + +0.5
2,362,590 - +1.5
2,362,590 - -2.1
2,362,591 + -0.5
2,362,599 - -0.5
2,362,599 - -0.3
2,362,600 - +0.5
2,362,600 - -1.1
2,362,601 - -2.3
2,362,601 - +0.1
2,362,634 + yfaO b2251 0.14 +0.9
2,362,688 - yfaO b2251 0.26 -0.5
2,362,691 + yfaO b2251 0.27 -0.9
2,362,691 + yfaO b2251 0.27 +1.0
2,362,691 + yfaO b2251 0.27 -0.5
2,362,691 + yfaO b2251 0.27 +0.5
2,362,691 + yfaO b2251 0.27 -1.2
2,362,699 - yfaO b2251 0.29 +0.2
2,362,757 + yfaO b2251 0.42 -1.7
2,362,772 + yfaO b2251 0.46 +0.5
2,362,772 + yfaO b2251 0.46 +0.4
2,362,815 + yfaO b2251 0.56 -1.0
2,362,815 + yfaO b2251 0.56 +0.2
2,362,822 - yfaO b2251 0.58 +0.5
2,362,822 - yfaO b2251 0.58 +0.0
2,362,919 - yfaO b2251 0.81 +0.5
2,362,931 - yfaO b2251 0.83 +0.5
2,362,994 + -0.1
2,363,002 + +0.1
2,363,002 + -0.5
2,363,003 + -0.8
2,363,008 + -0.5
2,363,008 + +0.5
2,363,082 + -1.1
2,363,082 + +0.5
2,363,084 + -0.5
2,363,088 + +0.5
2,363,093 + +0.5
2,363,093 + -1.1
2,363,126 - ais b2252 0.14 -0.5
2,363,142 - ais b2252 0.17 -2.3
2,363,153 + ais b2252 0.19 +0.5
2,363,244 + ais b2252 0.34 +2.5
2,363,244 + ais b2252 0.34 +0.5
2,363,275 + ais b2252 0.39 -1.5
2,363,275 + ais b2252 0.39 +0.5

Or see this region's nucleotide sequence