Experiment: KB with Avocadene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4700 and Psyr_4701 are separated by 66 nucleotides Psyr_4701 and Psyr_4702 are separated by 231 nucleotides Psyr_4702 and Psyr_4703 overlap by 4 nucleotides Psyr_4703 and Psyr_4704 are separated by 25 nucleotides
Psyr_4700: Psyr_4700 - malate synthase, at 5,569,094 to 5,571,271
_4700
Psyr_4701: Psyr_4701 - Response regulator receiver, at 5,571,338 to 5,571,784
_4701
Psyr_4702: Psyr_4702 - Cyclic nucleotide-binding:CBS:Putative nucleotidyltransferase DUF294, at 5,572,016 to 5,573,950
_4702
Psyr_4703: Psyr_4703 - Exonuclease, at 5,573,947 to 5,574,660
_4703
Psyr_4704: Psyr_4704 - conserved hypothetical protein, at 5,574,686 to 5,574,988
_4704
Position (kb) 5572
5573
5574 Strain fitness (log2 ratio) -1
0
1
2 at 5571.122 kb on + strand at 5571.269 kb on + strand at 5571.270 kb on - strand at 5571.270 kb on - strand at 5571.344 kb on + strand at 5571.344 kb on + strand at 5571.386 kb on - strand, within Psyr_4701 at 5571.769 kb on + strand at 5571.770 kb on - strand at 5571.770 kb on - strand at 5571.824 kb on - strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.995 kb on - strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.140 kb on - strand at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.299 kb on + strand, within Psyr_4702 at 5572.639 kb on - strand, within Psyr_4702 at 5572.984 kb on + strand, within Psyr_4702 at 5572.985 kb on - strand, within Psyr_4702 at 5573.266 kb on + strand, within Psyr_4702 at 5573.266 kb on + strand, within Psyr_4702 at 5573.267 kb on - strand, within Psyr_4702 at 5573.267 kb on - strand, within Psyr_4702 at 5573.419 kb on + strand, within Psyr_4702 at 5573.420 kb on - strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.608 kb on + strand, within Psyr_4702 at 5573.760 kb on - strand at 5573.760 kb on - strand at 5573.771 kb on + strand at 5573.772 kb on - strand at 5573.834 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.947 kb on - strand at 5573.947 kb on - strand at 5574.936 kb on + strand, within Psyr_4704 at 5574.936 kb on + strand, within Psyr_4704
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocadene 10 mM remove 5,571,122 + +1.4 5,571,269 + +0.6 5,571,270 - +0.4 5,571,270 - +1.4 5,571,344 + +1.2 5,571,344 + -0.0 5,571,386 - Psyr_4701 0.11 -0.0 5,571,769 + -1.1 5,571,770 - -0.6 5,571,770 - +0.2 5,571,824 - -0.6 5,571,947 + -0.6 5,571,947 + +0.2 5,571,947 + -0.4 5,571,947 + +1.8 5,571,948 - -0.4 5,571,948 - +1.8 5,571,948 - +0.8 5,571,948 - +0.5 5,571,995 - +0.5 5,572,071 + -0.6 5,572,071 + +1.5 5,572,071 + +0.0 5,572,071 + -0.1 5,572,071 + +1.7 5,572,071 + +0.6 5,572,071 + +0.9 5,572,071 + +0.6 5,572,071 + -0.3 5,572,071 + -1.1 5,572,072 - +0.5 5,572,072 - +0.3 5,572,140 - -0.0 5,572,223 + Psyr_4702 0.11 +0.4 5,572,223 + Psyr_4702 0.11 -0.5 5,572,223 + Psyr_4702 0.11 +0.2 5,572,224 - Psyr_4702 0.11 -0.4 5,572,224 - Psyr_4702 0.11 -0.5 5,572,224 - Psyr_4702 0.11 +0.3 5,572,224 - Psyr_4702 0.11 -0.5 5,572,299 + Psyr_4702 0.15 -1.7 5,572,639 - Psyr_4702 0.32 +0.3 5,572,984 + Psyr_4702 0.50 -0.6 5,572,985 - Psyr_4702 0.50 -0.1 5,573,266 + Psyr_4702 0.65 +0.3 5,573,266 + Psyr_4702 0.65 +0.9 5,573,267 - Psyr_4702 0.65 +0.2 5,573,267 - Psyr_4702 0.65 -0.9 5,573,419 + Psyr_4702 0.73 +0.2 5,573,420 - Psyr_4702 0.73 +1.0 5,573,423 + Psyr_4702 0.73 +0.2 5,573,423 + Psyr_4702 0.73 +0.0 5,573,423 + Psyr_4702 0.73 +1.2 5,573,423 + Psyr_4702 0.73 +1.3 5,573,423 + Psyr_4702 0.73 +0.1 5,573,423 + Psyr_4702 0.73 -0.2 5,573,423 + Psyr_4702 0.73 +0.4 5,573,423 + Psyr_4702 0.73 -0.9 5,573,423 + Psyr_4702 0.73 -0.4 5,573,424 - Psyr_4702 0.73 +2.0 5,573,424 - Psyr_4702 0.73 -0.1 5,573,424 - Psyr_4702 0.73 +1.1 5,573,608 + Psyr_4702 0.82 +1.2 5,573,760 - +0.1 5,573,760 - +0.0 5,573,771 + +1.0 5,573,772 - +0.6 5,573,834 + +0.5 5,573,946 + +0.4 5,573,946 + -1.0 5,573,946 + -0.2 5,573,946 + -0.4 5,573,947 - -1.2 5,573,947 - +0.2 5,574,936 + Psyr_4704 0.83 -0.3 5,574,936 + Psyr_4704 0.83 -0.8
Or see this region's nucleotide sequence