Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1662

Experiment: KB with Avocadene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1661 and Psyr_1662 are separated by 129 nucleotidesPsyr_1662 and Psyr_1663 are separated by 61 nucleotidesPsyr_1663 and Psyr_1664 are separated by 252 nucleotides Psyr_1661: Psyr_1661 - conserved hypothetical protein, at 1,864,113 to 1,866,959 _1661 Psyr_1662: Psyr_1662 - tRNA pseudouridine synthase, at 1,867,089 to 1,867,943 _1662 Psyr_1663: Psyr_1663 - phosphoribosylanthranilate isomerase, at 1,868,005 to 1,868,625 _1663 Psyr_1664: Psyr_1664 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,868,878 to 1,869,798 _1664 Position (kb) 1867 1868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1866.108 kb on + strand, within Psyr_1661at 1866.108 kb on + strand, within Psyr_1661at 1866.108 kb on + strand, within Psyr_1661at 1866.109 kb on - strand, within Psyr_1661at 1866.200 kb on + strand, within Psyr_1661at 1866.201 kb on - strand, within Psyr_1661at 1866.201 kb on - strand, within Psyr_1661at 1866.201 kb on - strand, within Psyr_1661at 1866.201 kb on - strand, within Psyr_1661at 1866.201 kb on - strand, within Psyr_1661at 1866.224 kb on - strand, within Psyr_1661at 1866.224 kb on - strand, within Psyr_1661at 1866.330 kb on - strand, within Psyr_1661at 1866.374 kb on - strand, within Psyr_1661at 1866.574 kb on + strand, within Psyr_1661at 1866.847 kb on - strandat 1866.847 kb on - strandat 1866.847 kb on - strandat 1867.026 kb on + strandat 1867.048 kb on + strandat 1867.050 kb on + strandat 1867.051 kb on - strandat 1867.051 kb on - strandat 1867.082 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.099 kb on + strandat 1867.100 kb on - strandat 1867.100 kb on - strandat 1867.100 kb on - strandat 1867.100 kb on - strandat 1867.100 kb on - strandat 1867.100 kb on - strandat 1867.100 kb on - strandat 1867.100 kb on - strandat 1867.161 kb on + strandat 1867.161 kb on + strandat 1867.161 kb on + strandat 1867.162 kb on - strandat 1867.162 kb on - strandat 1867.162 kb on - strandat 1867.162 kb on - strandat 1867.471 kb on - strand, within Psyr_1662at 1867.479 kb on + strand, within Psyr_1662at 1867.480 kb on - strand, within Psyr_1662at 1867.572 kb on + strand, within Psyr_1662at 1867.718 kb on + strand, within Psyr_1662at 1867.718 kb on + strand, within Psyr_1662at 1867.718 kb on + strand, within Psyr_1662at 1867.719 kb on - strand, within Psyr_1662at 1867.741 kb on + strand, within Psyr_1662at 1867.742 kb on - strand, within Psyr_1662at 1867.848 kb on + strand, within Psyr_1662at 1867.848 kb on + strand, within Psyr_1662at 1867.848 kb on + strand, within Psyr_1662at 1867.849 kb on - strand, within Psyr_1662at 1867.849 kb on - strand, within Psyr_1662at 1867.849 kb on - strand, within Psyr_1662at 1867.849 kb on - strand, within Psyr_1662at 1867.896 kb on + strandat 1867.896 kb on + strandat 1868.046 kb on - strandat 1868.149 kb on - strand, within Psyr_1663at 1868.303 kb on - strand, within Psyr_1663at 1868.359 kb on + strand, within Psyr_1663at 1868.392 kb on + strand, within Psyr_1663at 1868.392 kb on + strand, within Psyr_1663at 1868.392 kb on + strand, within Psyr_1663at 1868.797 kb on + strandat 1868.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadene 10 mM
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1,866,108 + Psyr_1661 0.70 -0.9
1,866,108 + Psyr_1661 0.70 +0.7
1,866,108 + Psyr_1661 0.70 -1.5
1,866,109 - Psyr_1661 0.70 +0.7
1,866,200 + Psyr_1661 0.73 +0.3
1,866,201 - Psyr_1661 0.73 +0.2
1,866,201 - Psyr_1661 0.73 +0.3
1,866,201 - Psyr_1661 0.73 -1.7
1,866,201 - Psyr_1661 0.73 +1.0
1,866,201 - Psyr_1661 0.73 +0.7
1,866,224 - Psyr_1661 0.74 +1.1
1,866,224 - Psyr_1661 0.74 +0.1
1,866,330 - Psyr_1661 0.78 -0.3
1,866,374 - Psyr_1661 0.79 +0.3
1,866,574 + Psyr_1661 0.86 -0.9
1,866,847 - +1.1
1,866,847 - +0.4
1,866,847 - +1.4
1,867,026 + +0.0
1,867,048 + +0.9
1,867,050 + -0.8
1,867,051 - +0.0
1,867,051 - -0.6
1,867,082 + +0.0
1,867,099 + -0.8
1,867,099 + +0.4
1,867,099 + +0.0
1,867,099 + -0.8
1,867,099 + +0.4
1,867,099 + +0.8
1,867,099 + +0.7
1,867,099 + +1.1
1,867,099 + -0.5
1,867,099 + -0.2
1,867,099 + +0.1
1,867,099 + +1.7
1,867,099 + +0.6
1,867,100 - -1.2
1,867,100 - -1.2
1,867,100 - +1.2
1,867,100 - -0.7
1,867,100 - +1.3
1,867,100 - -0.8
1,867,100 - -0.5
1,867,100 - +0.8
1,867,161 + -1.9
1,867,161 + +0.4
1,867,161 + -0.4
1,867,162 - +1.3
1,867,162 - +0.8
1,867,162 - +0.1
1,867,162 - -0.7
1,867,471 - Psyr_1662 0.45 +1.4
1,867,479 + Psyr_1662 0.46 +0.6
1,867,480 - Psyr_1662 0.46 +0.0
1,867,572 + Psyr_1662 0.56 -0.4
1,867,718 + Psyr_1662 0.74 -0.6
1,867,718 + Psyr_1662 0.74 -0.5
1,867,718 + Psyr_1662 0.74 -0.7
1,867,719 - Psyr_1662 0.74 -0.7
1,867,741 + Psyr_1662 0.76 +0.3
1,867,742 - Psyr_1662 0.76 -1.1
1,867,848 + Psyr_1662 0.89 -1.5
1,867,848 + Psyr_1662 0.89 -0.8
1,867,848 + Psyr_1662 0.89 -0.5
1,867,849 - Psyr_1662 0.89 +0.0
1,867,849 - Psyr_1662 0.89 +1.4
1,867,849 - Psyr_1662 0.89 +0.1
1,867,849 - Psyr_1662 0.89 +0.0
1,867,896 + +2.0
1,867,896 + -0.9
1,868,046 - -0.8
1,868,149 - Psyr_1663 0.23 -1.6
1,868,303 - Psyr_1663 0.48 +0.0
1,868,359 + Psyr_1663 0.57 -3.1
1,868,392 + Psyr_1663 0.62 +0.0
1,868,392 + Psyr_1663 0.62 -1.0
1,868,392 + Psyr_1663 0.62 -0.6
1,868,797 + +0.3
1,868,797 + +0.1

Or see this region's nucleotide sequence