Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0889

Experiment: KB with Avocadene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0888 and Psyr_0889 are separated by 147 nucleotidesPsyr_0889 and Psyr_0890 overlap by 4 nucleotidesPsyr_0890 and Psyr_0891 are separated by 47 nucleotides Psyr_0888: Psyr_0888 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,010,113 to 1,011,369 _0888 Psyr_0889: Psyr_0889 - SpoVT/AbrB-like protein, at 1,011,517 to 1,011,771 _0889 Psyr_0890: Psyr_0890 - PemK-like protein, at 1,011,768 to 1,012,115 _0890 Psyr_0891: Psyr_0891 - anti-ECFsigma factor, ChrR, at 1,012,163 to 1,012,825 _0891 Position (kb) 1011 1012Strain fitness (log2 ratio) -2 -1 0 1 2at 1011.371 kb on - strandat 1011.371 kb on - strandat 1011.371 kb on - strandat 1011.371 kb on - strandat 1011.439 kb on + strandat 1011.446 kb on + strandat 1011.447 kb on - strandat 1011.447 kb on - strandat 1011.484 kb on - strandat 1011.484 kb on - strandat 1011.487 kb on + strandat 1011.487 kb on + strandat 1011.487 kb on + strandat 1011.487 kb on + strandat 1011.487 kb on + strandat 1011.487 kb on + strandat 1011.488 kb on - strandat 1011.488 kb on - strandat 1011.488 kb on - strandat 1011.488 kb on - strandat 1011.488 kb on - strandat 1011.488 kb on - strandat 1011.488 kb on - strandat 1011.488 kb on - strandat 1011.492 kb on + strandat 1011.492 kb on + strandat 1011.492 kb on + strandat 1011.493 kb on - strandat 1011.493 kb on - strandat 1011.498 kb on + strandat 1011.498 kb on + strandat 1011.498 kb on + strandat 1011.499 kb on - strandat 1011.503 kb on + strandat 1011.579 kb on - strand, within Psyr_0889at 1011.579 kb on - strand, within Psyr_0889at 1011.613 kb on - strand, within Psyr_0889at 1011.779 kb on + strandat 1011.882 kb on + strand, within Psyr_0890at 1011.883 kb on - strand, within Psyr_0890at 1011.883 kb on - strand, within Psyr_0890at 1011.883 kb on - strand, within Psyr_0890at 1011.883 kb on - strand, within Psyr_0890at 1011.901 kb on + strand, within Psyr_0890at 1011.902 kb on - strand, within Psyr_0890at 1011.902 kb on - strand, within Psyr_0890at 1011.902 kb on - strand, within Psyr_0890at 1011.902 kb on - strand, within Psyr_0890at 1011.902 kb on - strand, within Psyr_0890at 1011.902 kb on - strand, within Psyr_0890at 1011.905 kb on + strand, within Psyr_0890at 1011.905 kb on + strand, within Psyr_0890at 1011.905 kb on + strand, within Psyr_0890at 1011.905 kb on + strand, within Psyr_0890at 1011.906 kb on - strand, within Psyr_0890at 1011.906 kb on - strand, within Psyr_0890at 1011.906 kb on - strand, within Psyr_0890at 1012.126 kb on + strandat 1012.261 kb on - strand, within Psyr_0891at 1012.328 kb on + strand, within Psyr_0891at 1012.328 kb on + strand, within Psyr_0891at 1012.328 kb on + strand, within Psyr_0891at 1012.329 kb on - strand, within Psyr_0891at 1012.329 kb on - strand, within Psyr_0891at 1012.329 kb on - strand, within Psyr_0891at 1012.335 kb on + strand, within Psyr_0891at 1012.336 kb on - strand, within Psyr_0891at 1012.336 kb on - strand, within Psyr_0891at 1012.336 kb on - strand, within Psyr_0891at 1012.464 kb on - strand, within Psyr_0891at 1012.490 kb on + strand, within Psyr_0891at 1012.490 kb on + strand, within Psyr_0891at 1012.491 kb on - strand, within Psyr_0891at 1012.491 kb on - strand, within Psyr_0891

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadene 10 mM
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1,011,371 - -0.0
1,011,371 - -0.0
1,011,371 - -0.2
1,011,371 - +2.1
1,011,439 + +0.5
1,011,446 + -0.2
1,011,447 - +0.5
1,011,447 - -0.2
1,011,484 - +0.8
1,011,484 - -0.7
1,011,487 + +1.8
1,011,487 + +0.1
1,011,487 + +0.5
1,011,487 + +1.4
1,011,487 + +0.2
1,011,487 + +0.6
1,011,488 - -0.8
1,011,488 - +0.2
1,011,488 - -0.3
1,011,488 - -1.2
1,011,488 - +1.0
1,011,488 - +0.1
1,011,488 - -0.1
1,011,488 - -0.4
1,011,492 + +0.4
1,011,492 + -0.1
1,011,492 + -1.9
1,011,493 - -0.2
1,011,493 - +0.2
1,011,498 + +0.5
1,011,498 + -0.6
1,011,498 + +0.1
1,011,499 - -0.2
1,011,503 + +1.1
1,011,579 - Psyr_0889 0.24 -1.2
1,011,579 - Psyr_0889 0.24 -2.0
1,011,613 - Psyr_0889 0.38 +1.5
1,011,779 + +0.5
1,011,882 + Psyr_0890 0.33 +2.1
1,011,883 - Psyr_0890 0.33 -0.7
1,011,883 - Psyr_0890 0.33 -0.5
1,011,883 - Psyr_0890 0.33 +0.4
1,011,883 - Psyr_0890 0.33 -2.4
1,011,901 + Psyr_0890 0.38 -0.3
1,011,902 - Psyr_0890 0.39 -0.7
1,011,902 - Psyr_0890 0.39 -0.8
1,011,902 - Psyr_0890 0.39 -1.4
1,011,902 - Psyr_0890 0.39 +1.5
1,011,902 - Psyr_0890 0.39 -0.2
1,011,902 - Psyr_0890 0.39 -1.0
1,011,905 + Psyr_0890 0.39 -1.1
1,011,905 + Psyr_0890 0.39 +0.8
1,011,905 + Psyr_0890 0.39 +0.1
1,011,905 + Psyr_0890 0.39 +0.8
1,011,906 - Psyr_0890 0.40 +0.4
1,011,906 - Psyr_0890 0.40 -0.3
1,011,906 - Psyr_0890 0.40 -0.6
1,012,126 + -0.1
1,012,261 - Psyr_0891 0.15 +0.6
1,012,328 + Psyr_0891 0.25 +0.1
1,012,328 + Psyr_0891 0.25 +0.8
1,012,328 + Psyr_0891 0.25 +0.3
1,012,329 - Psyr_0891 0.25 +0.7
1,012,329 - Psyr_0891 0.25 +0.9
1,012,329 - Psyr_0891 0.25 +0.8
1,012,335 + Psyr_0891 0.26 -0.5
1,012,336 - Psyr_0891 0.26 +0.0
1,012,336 - Psyr_0891 0.26 +0.4
1,012,336 - Psyr_0891 0.26 +0.2
1,012,464 - Psyr_0891 0.45 -0.7
1,012,490 + Psyr_0891 0.49 +0.2
1,012,490 + Psyr_0891 0.49 +0.6
1,012,491 - Psyr_0891 0.49 +0.1
1,012,491 - Psyr_0891 0.49 -0.4

Or see this region's nucleotide sequence