Strain Fitness in Escherichia coli BW25113 around b4379

Experiment: LB Anaerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjjV and yjjW are separated by 419 nucleotidesyjjW and yjjI overlap by 29 nucleotides b4378: yjjV - predicted DNase (NCBI), at 4,611,504 to 4,612,283 yjjV b4379: yjjW - predicted pyruvate formate lyase activating enzyme (NCBI), at 4,612,703 to 4,613,566 yjjW b4380: yjjI - hypothetical protein (NCBI), at 4,613,538 to 4,615,088 yjjI Position (kb) 4612 4613 4614Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4611.811 kb on - strand, within yjjVat 4611.912 kb on + strand, within yjjVat 4611.950 kb on - strand, within yjjVat 4611.988 kb on + strand, within yjjVat 4612.032 kb on + strand, within yjjVat 4612.032 kb on + strand, within yjjVat 4612.040 kb on + strand, within yjjVat 4612.112 kb on + strand, within yjjVat 4612.255 kb on - strandat 4612.258 kb on + strandat 4612.258 kb on + strandat 4612.275 kb on - strandat 4612.312 kb on + strandat 4612.319 kb on + strandat 4612.349 kb on - strandat 4612.349 kb on - strandat 4612.369 kb on - strandat 4612.395 kb on + strandat 4612.397 kb on - strandat 4612.431 kb on - strandat 4612.475 kb on - strandat 4612.475 kb on - strandat 4612.558 kb on - strandat 4612.630 kb on + strandat 4612.642 kb on + strandat 4612.659 kb on - strandat 4612.740 kb on - strandat 4612.740 kb on - strandat 4612.747 kb on + strandat 4612.800 kb on - strand, within yjjWat 4612.811 kb on + strand, within yjjWat 4612.811 kb on + strand, within yjjWat 4612.822 kb on - strand, within yjjWat 4612.822 kb on - strand, within yjjWat 4612.905 kb on - strand, within yjjWat 4612.915 kb on + strand, within yjjWat 4612.923 kb on - strand, within yjjWat 4612.932 kb on - strand, within yjjWat 4612.990 kb on + strand, within yjjWat 4613.060 kb on + strand, within yjjWat 4613.077 kb on + strand, within yjjWat 4613.122 kb on - strand, within yjjWat 4613.140 kb on + strand, within yjjWat 4613.140 kb on + strand, within yjjWat 4613.215 kb on + strand, within yjjWat 4613.215 kb on + strand, within yjjWat 4613.253 kb on + strand, within yjjWat 4613.255 kb on + strand, within yjjWat 4613.263 kb on - strand, within yjjWat 4613.314 kb on + strand, within yjjWat 4613.314 kb on + strand, within yjjWat 4613.320 kb on - strand, within yjjWat 4613.325 kb on + strand, within yjjWat 4613.325 kb on + strand, within yjjWat 4613.325 kb on + strand, within yjjWat 4613.325 kb on + strand, within yjjWat 4613.333 kb on - strand, within yjjWat 4613.333 kb on - strand, within yjjWat 4613.397 kb on - strand, within yjjWat 4613.413 kb on + strand, within yjjWat 4613.416 kb on - strand, within yjjWat 4613.420 kb on + strand, within yjjWat 4613.422 kb on + strand, within yjjWat 4613.470 kb on + strand, within yjjWat 4613.551 kb on - strandat 4613.643 kb on - strandat 4613.687 kb on + strandat 4613.687 kb on + strandat 4613.703 kb on - strand, within yjjIat 4613.711 kb on + strand, within yjjIat 4613.871 kb on + strand, within yjjIat 4613.871 kb on + strand, within yjjIat 4613.888 kb on + strand, within yjjIat 4613.924 kb on + strand, within yjjIat 4613.936 kb on + strand, within yjjIat 4613.952 kb on + strand, within yjjIat 4614.070 kb on - strand, within yjjIat 4614.070 kb on - strand, within yjjIat 4614.102 kb on + strand, within yjjIat 4614.132 kb on - strand, within yjjIat 4614.257 kb on + strand, within yjjIat 4614.262 kb on + strand, within yjjIat 4614.262 kb on + strand, within yjjIat 4614.329 kb on + strand, within yjjIat 4614.334 kb on + strand, within yjjIat 4614.382 kb on - strand, within yjjIat 4614.382 kb on - strand, within yjjIat 4614.386 kb on + strand, within yjjIat 4614.386 kb on + strand, within yjjIat 4614.455 kb on + strand, within yjjI

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM
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4,611,811 - yjjV b4378 0.39 +0.5
4,611,912 + yjjV b4378 0.52 -0.8
4,611,950 - yjjV b4378 0.57 +0.4
4,611,988 + yjjV b4378 0.62 +0.2
4,612,032 + yjjV b4378 0.68 -0.7
4,612,032 + yjjV b4378 0.68 -0.2
4,612,040 + yjjV b4378 0.69 +0.1
4,612,112 + yjjV b4378 0.78 -1.3
4,612,255 - +1.6
4,612,258 + -0.4
4,612,258 + -1.0
4,612,275 - -0.0
4,612,312 + -1.0
4,612,319 + +0.1
4,612,349 - +0.5
4,612,349 - +0.3
4,612,369 - +0.0
4,612,395 + +1.3
4,612,397 - +0.2
4,612,431 - -1.6
4,612,475 - +0.9
4,612,475 - -0.1
4,612,558 - +0.6
4,612,630 + -0.5
4,612,642 + +0.0
4,612,659 - +0.3
4,612,740 - +0.6
4,612,740 - -0.7
4,612,747 + +0.8
4,612,800 - yjjW b4379 0.11 +0.5
4,612,811 + yjjW b4379 0.12 +0.9
4,612,811 + yjjW b4379 0.12 -0.4
4,612,822 - yjjW b4379 0.14 +1.7
4,612,822 - yjjW b4379 0.14 +1.6
4,612,905 - yjjW b4379 0.23 +0.5
4,612,915 + yjjW b4379 0.25 +0.3
4,612,923 - yjjW b4379 0.25 +1.4
4,612,932 - yjjW b4379 0.27 +3.0
4,612,990 + yjjW b4379 0.33 +1.0
4,613,060 + yjjW b4379 0.41 +0.8
4,613,077 + yjjW b4379 0.43 +0.1
4,613,122 - yjjW b4379 0.48 +0.4
4,613,140 + yjjW b4379 0.51 -1.9
4,613,140 + yjjW b4379 0.51 +0.6
4,613,215 + yjjW b4379 0.59 +0.4
4,613,215 + yjjW b4379 0.59 +1.0
4,613,253 + yjjW b4379 0.64 +0.1
4,613,255 + yjjW b4379 0.64 -0.4
4,613,263 - yjjW b4379 0.65 +0.7
4,613,314 + yjjW b4379 0.71 +0.3
4,613,314 + yjjW b4379 0.71 +0.0
4,613,320 - yjjW b4379 0.71 -0.2
4,613,325 + yjjW b4379 0.72 +0.0
4,613,325 + yjjW b4379 0.72 +0.4
4,613,325 + yjjW b4379 0.72 +0.8
4,613,325 + yjjW b4379 0.72 -0.0
4,613,333 - yjjW b4379 0.73 +1.2
4,613,333 - yjjW b4379 0.73 +1.0
4,613,397 - yjjW b4379 0.80 -1.4
4,613,413 + yjjW b4379 0.82 +0.5
4,613,416 - yjjW b4379 0.83 -0.2
4,613,420 + yjjW b4379 0.83 -1.1
4,613,422 + yjjW b4379 0.83 +0.4
4,613,470 + yjjW b4379 0.89 -0.3
4,613,551 - -0.4
4,613,643 - -0.1
4,613,687 + +0.8
4,613,687 + +0.6
4,613,703 - yjjI b4380 0.11 +0.8
4,613,711 + yjjI b4380 0.11 -0.3
4,613,871 + yjjI b4380 0.21 +0.0
4,613,871 + yjjI b4380 0.21 -0.8
4,613,888 + yjjI b4380 0.23 -0.5
4,613,924 + yjjI b4380 0.25 +0.6
4,613,936 + yjjI b4380 0.26 +0.2
4,613,952 + yjjI b4380 0.27 +0.7
4,614,070 - yjjI b4380 0.34 +1.6
4,614,070 - yjjI b4380 0.34 -0.4
4,614,102 + yjjI b4380 0.36 +0.9
4,614,132 - yjjI b4380 0.38 +0.3
4,614,257 + yjjI b4380 0.46 +0.0
4,614,262 + yjjI b4380 0.47 -0.8
4,614,262 + yjjI b4380 0.47 +0.5
4,614,329 + yjjI b4380 0.51 +0.5
4,614,334 + yjjI b4380 0.51 +0.4
4,614,382 - yjjI b4380 0.54 +0.2
4,614,382 - yjjI b4380 0.54 +0.8
4,614,386 + yjjI b4380 0.55 -0.8
4,614,386 + yjjI b4380 0.55 -0.3
4,614,455 + yjjI b4380 0.59 +0.0

Or see this region's nucleotide sequence