Strain Fitness in Agrobacterium fabrum C58 around Atu6026

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6024 and Atu6025 are separated by 114 nucleotidesAtu6025 and Atu6026 are separated by 1 nucleotidesAtu6026 and Atu6027 are separated by 73 nucleotidesAtu6027 and Atu6028 are separated by 64 nucleotides Atu6024: Atu6024 - transcriptional regulator, LysR family, at 35,819 to 36,739 Atu6024 Atu6025: Atu6025 - ABC transporter, membrane spanning protein (nopaline), at 36,854 to 37,579 Atu6025 Atu6026: Atu6026 - ABC transporter, membrane spanning protein (nopaline), at 37,581 to 38,291 Atu6026 Atu6027: Atu6027 - ABC transporter, substrate binding protein (nopaline), at 38,365 to 39,216 Atu6027 Atu6028: Atu6028 - ABC transporter, nucleotide binding/ATPase protein (nopaline), at 39,281 to 40,054 Atu6028 Position (kb) 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 36.581 kb on + strand, within Atu6024at 36.581 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.597 kb on + strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.605 kb on - strand, within Atu6024at 36.639 kb on + strand, within Atu6024at 36.712 kb on - strandat 36.747 kb on + strandat 36.747 kb on + strandat 36.790 kb on - strandat 36.800 kb on + strandat 36.851 kb on + strandat 36.864 kb on + strandat 36.872 kb on + strandat 36.880 kb on - strandat 36.957 kb on + strand, within Atu6025at 36.984 kb on + strand, within Atu6025at 37.003 kb on + strand, within Atu6025at 37.003 kb on + strand, within Atu6025at 37.003 kb on + strand, within Atu6025at 37.011 kb on - strand, within Atu6025at 37.011 kb on - strand, within Atu6025at 37.015 kb on - strand, within Atu6025at 37.017 kb on + strand, within Atu6025at 37.071 kb on + strand, within Atu6025at 37.093 kb on + strand, within Atu6025at 37.114 kb on - strand, within Atu6025at 37.169 kb on + strand, within Atu6025at 37.247 kb on + strand, within Atu6025at 37.247 kb on + strand, within Atu6025at 37.247 kb on + strand, within Atu6025at 37.247 kb on + strand, within Atu6025at 37.247 kb on + strand, within Atu6025at 37.255 kb on + strand, within Atu6025at 37.255 kb on - strand, within Atu6025at 37.255 kb on - strand, within Atu6025at 37.255 kb on - strand, within Atu6025at 37.255 kb on - strand, within Atu6025at 37.284 kb on + strand, within Atu6025at 37.284 kb on + strand, within Atu6025at 37.289 kb on + strand, within Atu6025at 37.297 kb on - strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.338 kb on + strand, within Atu6025at 37.343 kb on + strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.346 kb on - strand, within Atu6025at 37.348 kb on + strand, within Atu6025at 37.351 kb on - strand, within Atu6025at 37.356 kb on - strand, within Atu6025at 37.373 kb on + strand, within Atu6025at 37.390 kb on + strand, within Atu6025at 37.404 kb on + strand, within Atu6025at 37.452 kb on + strand, within Atu6025at 37.488 kb on - strand, within Atu6025at 37.522 kb on - strandat 37.533 kb on + strandat 37.538 kb on + strandat 37.590 kb on + strandat 37.595 kb on - strandat 37.695 kb on - strand, within Atu6026at 37.758 kb on + strand, within Atu6026at 37.758 kb on + strand, within Atu6026at 37.758 kb on + strand, within Atu6026at 37.801 kb on + strand, within Atu6026at 37.811 kb on + strand, within Atu6026at 37.885 kb on + strand, within Atu6026at 37.893 kb on - strand, within Atu6026at 37.895 kb on + strand, within Atu6026at 37.934 kb on + strand, within Atu6026at 37.994 kb on - strand, within Atu6026at 38.035 kb on + strand, within Atu6026at 38.074 kb on - strand, within Atu6026at 38.107 kb on + strand, within Atu6026at 38.115 kb on - strand, within Atu6026at 38.138 kb on - strand, within Atu6026at 38.164 kb on + strand, within Atu6026at 38.184 kb on - strand, within Atu6026at 38.289 kb on - strandat 38.293 kb on + strandat 38.299 kb on + strandat 38.301 kb on - strandat 38.370 kb on + strandat 38.370 kb on + strandat 38.370 kb on + strandat 38.410 kb on + strandat 38.415 kb on + strandat 38.418 kb on - strandat 38.418 kb on - strandat 38.423 kb on - strandat 38.462 kb on + strand, within Atu6027at 38.470 kb on - strand, within Atu6027at 38.498 kb on + strand, within Atu6027at 38.564 kb on + strand, within Atu6027at 38.604 kb on + strand, within Atu6027at 38.612 kb on - strand, within Atu6027at 38.612 kb on - strand, within Atu6027at 38.656 kb on + strand, within Atu6027at 38.671 kb on - strand, within Atu6027at 38.722 kb on - strand, within Atu6027at 38.733 kb on + strand, within Atu6027at 38.741 kb on - strand, within Atu6027at 38.782 kb on - strand, within Atu6027at 38.853 kb on - strand, within Atu6027at 38.878 kb on - strand, within Atu6027at 38.984 kb on + strand, within Atu6027at 39.016 kb on + strand, within Atu6027at 39.104 kb on - strand, within Atu6027at 39.137 kb on + strandat 39.148 kb on + strandat 39.265 kb on - strandat 39.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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36,581 + Atu6024 0.83 -0.1
36,581 + Atu6024 0.83 -0.4
36,597 + Atu6024 0.84 -1.4
36,597 + Atu6024 0.84 -1.7
36,597 + Atu6024 0.84 +0.6
36,597 + Atu6024 0.84 +0.8
36,605 - Atu6024 0.85 -0.2
36,605 - Atu6024 0.85 -0.1
36,605 - Atu6024 0.85 -0.6
36,605 - Atu6024 0.85 -0.1
36,639 + Atu6024 0.89 +0.4
36,712 - +0.5
36,747 + -1.0
36,747 + +1.3
36,790 - +0.7
36,800 + -0.8
36,851 + -0.1
36,864 + +0.1
36,872 + -1.0
36,880 - -0.7
36,957 + Atu6025 0.14 +0.4
36,984 + Atu6025 0.18 +0.5
37,003 + Atu6025 0.21 +0.2
37,003 + Atu6025 0.21 +0.6
37,003 + Atu6025 0.21 +1.3
37,011 - Atu6025 0.22 -0.9
37,011 - Atu6025 0.22 -0.8
37,015 - Atu6025 0.22 -0.0
37,017 + Atu6025 0.22 -1.5
37,071 + Atu6025 0.30 -0.6
37,093 + Atu6025 0.33 -0.7
37,114 - Atu6025 0.36 +0.1
37,169 + Atu6025 0.43 -0.1
37,247 + Atu6025 0.54 +0.8
37,247 + Atu6025 0.54 -1.9
37,247 + Atu6025 0.54 -1.3
37,247 + Atu6025 0.54 +0.4
37,247 + Atu6025 0.54 +0.3
37,255 + Atu6025 0.55 -1.6
37,255 - Atu6025 0.55 +1.6
37,255 - Atu6025 0.55 +0.5
37,255 - Atu6025 0.55 +2.9
37,255 - Atu6025 0.55 +0.5
37,284 + Atu6025 0.59 -0.5
37,284 + Atu6025 0.59 +0.7
37,289 + Atu6025 0.60 -0.1
37,297 - Atu6025 0.61 -0.4
37,338 + Atu6025 0.67 -0.6
37,338 + Atu6025 0.67 -1.0
37,338 + Atu6025 0.67 -0.5
37,338 + Atu6025 0.67 +0.7
37,338 + Atu6025 0.67 -0.3
37,338 + Atu6025 0.67 +3.1
37,338 + Atu6025 0.67 +0.5
37,338 + Atu6025 0.67 +2.2
37,338 + Atu6025 0.67 -0.7
37,343 + Atu6025 0.67 +0.1
37,346 - Atu6025 0.68 -2.0
37,346 - Atu6025 0.68 +2.1
37,346 - Atu6025 0.68 -2.7
37,346 - Atu6025 0.68 -0.1
37,346 - Atu6025 0.68 +1.5
37,346 - Atu6025 0.68 -0.4
37,346 - Atu6025 0.68 -3.9
37,346 - Atu6025 0.68 +0.3
37,346 - Atu6025 0.68 -2.2
37,346 - Atu6025 0.68 +0.3
37,346 - Atu6025 0.68 -0.1
37,346 - Atu6025 0.68 +0.4
37,346 - Atu6025 0.68 +0.6
37,346 - Atu6025 0.68 +1.1
37,346 - Atu6025 0.68 +0.3
37,348 + Atu6025 0.68 -0.3
37,351 - Atu6025 0.68 +1.3
37,356 - Atu6025 0.69 +0.2
37,373 + Atu6025 0.71 -1.0
37,390 + Atu6025 0.74 +0.4
37,404 + Atu6025 0.76 +1.0
37,452 + Atu6025 0.82 -0.7
37,488 - Atu6025 0.87 -0.1
37,522 - +1.3
37,533 + +1.3
37,538 + +0.3
37,590 + +1.9
37,595 - +0.4
37,695 - Atu6026 0.16 -3.1
37,758 + Atu6026 0.25 -1.5
37,758 + Atu6026 0.25 -1.8
37,758 + Atu6026 0.25 +0.0
37,801 + Atu6026 0.31 -0.6
37,811 + Atu6026 0.32 +3.0
37,885 + Atu6026 0.43 -1.2
37,893 - Atu6026 0.44 +0.9
37,895 + Atu6026 0.44 -0.8
37,934 + Atu6026 0.50 -0.9
37,994 - Atu6026 0.58 -1.3
38,035 + Atu6026 0.64 -0.3
38,074 - Atu6026 0.69 +0.3
38,107 + Atu6026 0.74 +2.9
38,115 - Atu6026 0.75 -0.3
38,138 - Atu6026 0.78 -3.8
38,164 + Atu6026 0.82 +0.3
38,184 - Atu6026 0.85 -0.4
38,289 - +0.3
38,293 + +0.0
38,299 + -1.8
38,301 - -3.2
38,370 + -2.5
38,370 + -2.5
38,370 + +1.0
38,410 + -1.1
38,415 + -0.2
38,418 - -0.4
38,418 - -0.3
38,423 - -0.4
38,462 + Atu6027 0.11 +0.8
38,470 - Atu6027 0.12 +0.8
38,498 + Atu6027 0.16 -0.7
38,564 + Atu6027 0.23 -0.2
38,604 + Atu6027 0.28 -1.8
38,612 - Atu6027 0.29 -1.0
38,612 - Atu6027 0.29 +2.2
38,656 + Atu6027 0.34 -0.3
38,671 - Atu6027 0.36 +0.4
38,722 - Atu6027 0.42 -1.5
38,733 + Atu6027 0.43 -0.3
38,741 - Atu6027 0.44 -1.1
38,782 - Atu6027 0.49 -2.4
38,853 - Atu6027 0.57 +0.3
38,878 - Atu6027 0.60 -2.5
38,984 + Atu6027 0.73 -2.3
39,016 + Atu6027 0.76 -1.0
39,104 - Atu6027 0.87 +0.1
39,137 + -0.5
39,148 + -2.2
39,265 - -0.3
39,286 - +0.3

Or see this region's nucleotide sequence