Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0865 and Atu0866 are separated by 344 nucleotides Atu0866 and Atu0867 are separated by 24 nucleotides
Atu0865: Atu0865 - transcriptional regulator, AraC family, at 862,009 to 862,815
Atu0865
Atu0866: Atu0866 - RhtB family transporter, at 863,160 to 863,771
Atu0866
Atu0867: Atu0867 - aldo/keto reductase, at 863,796 to 864,623
Atu0867
Position (kb) 863
864 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 862.178 kb on + strand, within Atu0865 at 862.181 kb on - strand, within Atu0865 at 862.196 kb on + strand, within Atu0865 at 862.371 kb on + strand, within Atu0865 at 862.422 kb on - strand, within Atu0865 at 862.560 kb on - strand, within Atu0865 at 862.565 kb on - strand, within Atu0865 at 862.623 kb on + strand, within Atu0865 at 862.649 kb on + strand, within Atu0865 at 862.649 kb on + strand, within Atu0865 at 862.862 kb on + strand at 862.872 kb on + strand at 862.970 kb on + strand at 863.003 kb on - strand at 863.003 kb on - strand at 863.020 kb on + strand at 863.042 kb on + strand at 863.060 kb on + strand at 863.126 kb on - strand at 863.134 kb on - strand at 863.145 kb on + strand at 863.153 kb on - strand at 863.153 kb on - strand at 863.158 kb on - strand at 863.219 kb on + strand at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.251 kb on + strand, within Atu0866 at 863.259 kb on - strand, within Atu0866 at 863.259 kb on - strand, within Atu0866 at 863.340 kb on + strand, within Atu0866 at 863.347 kb on + strand, within Atu0866 at 863.348 kb on - strand, within Atu0866 at 863.348 kb on - strand, within Atu0866 at 863.355 kb on - strand, within Atu0866 at 863.355 kb on - strand, within Atu0866 at 863.360 kb on - strand, within Atu0866 at 863.369 kb on + strand, within Atu0866 at 863.396 kb on + strand, within Atu0866 at 863.404 kb on - strand, within Atu0866 at 863.404 kb on - strand, within Atu0866 at 863.404 kb on - strand, within Atu0866 at 863.515 kb on - strand, within Atu0866 at 863.616 kb on + strand, within Atu0866 at 863.616 kb on + strand, within Atu0866 at 863.616 kb on + strand, within Atu0866 at 863.624 kb on - strand, within Atu0866 at 863.703 kb on + strand, within Atu0866 at 863.705 kb on + strand, within Atu0866 at 863.941 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.977 kb on + strand, within Atu0867 at 863.985 kb on - strand, within Atu0867 at 863.988 kb on + strand, within Atu0867 at 864.029 kb on + strand, within Atu0867 at 864.163 kb on - strand, within Atu0867 at 864.255 kb on - strand, within Atu0867 at 864.317 kb on - strand, within Atu0867 at 864.345 kb on - strand, within Atu0867 at 864.400 kb on + strand, within Atu0867 at 864.427 kb on - strand, within Atu0867 at 864.618 kb on + strand at 864.618 kb on + strand at 864.654 kb on - strand at 864.748 kb on + strand at 864.761 kb on - strand at 864.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 862,178 + Atu0865 0.21 -0.6 862,181 - Atu0865 0.21 +0.4 862,196 + Atu0865 0.23 -0.8 862,371 + Atu0865 0.45 -0.7 862,422 - Atu0865 0.51 -0.6 862,560 - Atu0865 0.68 +1.6 862,565 - Atu0865 0.69 +0.0 862,623 + Atu0865 0.76 -0.4 862,649 + Atu0865 0.79 +0.2 862,649 + Atu0865 0.79 +0.7 862,862 + -0.1 862,872 + -0.5 862,970 + -2.1 863,003 - +0.0 863,003 - +1.7 863,020 + +0.6 863,042 + -0.3 863,060 + -0.8 863,126 - -0.7 863,134 - +1.1 863,145 + -0.9 863,153 - -0.5 863,153 - +0.5 863,158 - -1.0 863,219 + -0.6 863,251 + Atu0866 0.15 +0.6 863,251 + Atu0866 0.15 -0.3 863,251 + Atu0866 0.15 -0.8 863,251 + Atu0866 0.15 +0.5 863,251 + Atu0866 0.15 +0.3 863,251 + Atu0866 0.15 -0.0 863,259 - Atu0866 0.16 +0.9 863,259 - Atu0866 0.16 +1.0 863,340 + Atu0866 0.29 -0.0 863,347 + Atu0866 0.31 -1.2 863,348 - Atu0866 0.31 -0.3 863,348 - Atu0866 0.31 -0.1 863,355 - Atu0866 0.32 -1.6 863,355 - Atu0866 0.32 +0.5 863,360 - Atu0866 0.33 -1.9 863,369 + Atu0866 0.34 -0.2 863,396 + Atu0866 0.39 +0.1 863,404 - Atu0866 0.40 +0.2 863,404 - Atu0866 0.40 +0.4 863,404 - Atu0866 0.40 -0.4 863,515 - Atu0866 0.58 -0.6 863,616 + Atu0866 0.75 -0.9 863,616 + Atu0866 0.75 +0.3 863,616 + Atu0866 0.75 +0.5 863,624 - Atu0866 0.76 -1.1 863,703 + Atu0866 0.89 +0.7 863,705 + Atu0866 0.89 -0.6 863,941 + Atu0867 0.18 -2.4 863,977 + Atu0867 0.22 +0.3 863,977 + Atu0867 0.22 -0.5 863,977 + Atu0867 0.22 -0.4 863,977 + Atu0867 0.22 -0.5 863,985 - Atu0867 0.23 -0.1 863,988 + Atu0867 0.23 -2.1 864,029 + Atu0867 0.28 +0.2 864,163 - Atu0867 0.44 +3.8 864,255 - Atu0867 0.55 -0.4 864,317 - Atu0867 0.63 -1.1 864,345 - Atu0867 0.66 -0.5 864,400 + Atu0867 0.73 -0.4 864,427 - Atu0867 0.76 -0.4 864,618 + +0.2 864,618 + -0.1 864,654 - -0.9 864,748 + +0.1 864,761 - +0.7 864,761 - +0.8
Or see this region's nucleotide sequence