Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0603 and Atu0604 are separated by 110 nucleotides Atu0604 and Atu0605 are separated by 87 nucleotides Atu0605 and Atu0606 are separated by 15 nucleotides Atu0606 and Atu0607 are separated by 84 nucleotides
Atu0603: Atu0603 - hypothetical protein, at 590,323 to 591,507
Atu0603
Atu0604: Atu0604 - hypothetical protein, at 591,618 to 591,965
Atu0604
Atu0605: Atu0605 - transcriptional regulator, LysR family, at 592,053 to 592,925
Atu0605
Atu0606: Atu0606 - hypothetical protein, at 592,941 to 593,198
Atu0606
Atu0607: Atu0607 - isocitrate lyase, at 593,283 to 594,572
Atu0607
Position (kb) 592
593 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 591.062 kb on + strand, within Atu0603 at 591.062 kb on + strand, within Atu0603 at 591.070 kb on - strand, within Atu0603 at 591.283 kb on + strand, within Atu0603 at 591.291 kb on - strand, within Atu0603 at 591.291 kb on - strand, within Atu0603 at 591.311 kb on + strand, within Atu0603 at 591.326 kb on - strand, within Atu0603 at 591.372 kb on - strand, within Atu0603 at 591.425 kb on + strand at 591.425 kb on + strand at 591.425 kb on + strand at 591.468 kb on + strand at 591.477 kb on - strand at 591.517 kb on + strand at 591.614 kb on + strand at 591.632 kb on - strand at 591.632 kb on - strand at 591.678 kb on - strand, within Atu0604 at 591.774 kb on + strand, within Atu0604 at 591.796 kb on - strand, within Atu0604 at 591.859 kb on + strand, within Atu0604 at 591.947 kb on - strand at 592.000 kb on - strand at 592.103 kb on - strand at 592.137 kb on + strand at 592.137 kb on + strand at 592.163 kb on + strand, within Atu0605 at 592.197 kb on + strand, within Atu0605 at 592.262 kb on + strand, within Atu0605 at 592.262 kb on + strand, within Atu0605 at 592.262 kb on + strand, within Atu0605 at 592.334 kb on + strand, within Atu0605 at 592.396 kb on - strand, within Atu0605 at 592.399 kb on + strand, within Atu0605 at 592.541 kb on + strand, within Atu0605 at 592.628 kb on - strand, within Atu0605 at 592.635 kb on + strand, within Atu0605 at 592.666 kb on + strand, within Atu0605 at 592.722 kb on + strand, within Atu0605 at 592.860 kb on + strand at 592.882 kb on - strand at 592.995 kb on + strand, within Atu0606 at 593.013 kb on + strand, within Atu0606 at 593.161 kb on + strand, within Atu0606 at 593.252 kb on + strand at 593.265 kb on - strand at 593.265 kb on - strand at 593.296 kb on + strand at 593.327 kb on - strand at 593.337 kb on + strand at 593.345 kb on - strand at 593.345 kb on - strand at 593.424 kb on + strand, within Atu0607 at 593.427 kb on - strand, within Atu0607 at 593.467 kb on - strand, within Atu0607 at 593.486 kb on + strand, within Atu0607 at 593.536 kb on - strand, within Atu0607 at 593.543 kb on + strand, within Atu0607 at 593.646 kb on + strand, within Atu0607 at 593.649 kb on - strand, within Atu0607 at 593.687 kb on - strand, within Atu0607 at 593.698 kb on - strand, within Atu0607 at 593.744 kb on + strand, within Atu0607 at 593.744 kb on + strand, within Atu0607 at 593.758 kb on + strand, within Atu0607 at 593.766 kb on - strand, within Atu0607 at 593.784 kb on + strand, within Atu0607 at 593.786 kb on + strand, within Atu0607 at 593.794 kb on - strand, within Atu0607 at 593.794 kb on - strand, within Atu0607 at 593.805 kb on - strand, within Atu0607 at 593.815 kb on - strand, within Atu0607 at 593.816 kb on - strand, within Atu0607
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 591,062 + Atu0603 0.62 +0.3 591,062 + Atu0603 0.62 +0.6 591,070 - Atu0603 0.63 -0.0 591,283 + Atu0603 0.81 +1.7 591,291 - Atu0603 0.82 +0.4 591,291 - Atu0603 0.82 -0.2 591,311 + Atu0603 0.83 -0.1 591,326 - Atu0603 0.85 -0.5 591,372 - Atu0603 0.89 +0.3 591,425 + +0.2 591,425 + -1.1 591,425 + -0.1 591,468 + -0.8 591,477 - -0.1 591,517 + +0.9 591,614 + +0.6 591,632 - -0.7 591,632 - +0.7 591,678 - Atu0604 0.17 +0.3 591,774 + Atu0604 0.45 -0.6 591,796 - Atu0604 0.51 -0.4 591,859 + Atu0604 0.69 +1.0 591,947 - -0.8 592,000 - +0.8 592,103 - -0.2 592,137 + -0.2 592,137 + +0.3 592,163 + Atu0605 0.13 +6.6 592,197 + Atu0605 0.16 -0.6 592,262 + Atu0605 0.24 -0.2 592,262 + Atu0605 0.24 -0.6 592,262 + Atu0605 0.24 +1.1 592,334 + Atu0605 0.32 -0.2 592,396 - Atu0605 0.39 +0.3 592,399 + Atu0605 0.40 +0.2 592,541 + Atu0605 0.56 -0.7 592,628 - Atu0605 0.66 +0.0 592,635 + Atu0605 0.67 +0.7 592,666 + Atu0605 0.70 +0.1 592,722 + Atu0605 0.77 +0.6 592,860 + +0.1 592,882 - -0.5 592,995 + Atu0606 0.21 +0.0 593,013 + Atu0606 0.28 +0.1 593,161 + Atu0606 0.85 -0.1 593,252 + +0.2 593,265 - -0.1 593,265 - +0.3 593,296 + -0.3 593,327 - -1.9 593,337 + -0.2 593,345 - -0.3 593,345 - -0.0 593,424 + Atu0607 0.11 -0.2 593,427 - Atu0607 0.11 +1.8 593,467 - Atu0607 0.14 +0.5 593,486 + Atu0607 0.16 +0.3 593,536 - Atu0607 0.20 -0.4 593,543 + Atu0607 0.20 -0.1 593,646 + Atu0607 0.28 -1.0 593,649 - Atu0607 0.28 -0.7 593,687 - Atu0607 0.31 -0.2 593,698 - Atu0607 0.32 +0.5 593,744 + Atu0607 0.36 -0.4 593,744 + Atu0607 0.36 +0.3 593,758 + Atu0607 0.37 +2.9 593,766 - Atu0607 0.37 -0.5 593,784 + Atu0607 0.39 -0.0 593,786 + Atu0607 0.39 -0.7 593,794 - Atu0607 0.40 +1.9 593,794 - Atu0607 0.40 -0.6 593,805 - Atu0607 0.40 +0.3 593,815 - Atu0607 0.41 +0.6 593,816 - Atu0607 0.41 -1.0
Or see this region's nucleotide sequence