Strain Fitness in Agrobacterium fabrum C58 around Atu0373

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0372 and Atu0373 are separated by 166 nucleotidesAtu0373 and Atu0374 are separated by 69 nucleotides Atu0372: Atu0372 - hypothetical protein, at 365,886 to 366,806 Atu0372 Atu0373: Atu0373 - methyl-accepting chemotaxis protein, at 366,973 to 369,300 Atu0373 Atu0374: Atu0374 - inosine-uridine preferring nucleoside hydrolase, at 369,370 to 370,314 Atu0374 Position (kb) 366 367 368 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 365.986 kb on + strand, within Atu0372at 365.996 kb on - strand, within Atu0372at 366.012 kb on + strand, within Atu0372at 366.020 kb on - strand, within Atu0372at 366.020 kb on - strand, within Atu0372at 366.029 kb on + strand, within Atu0372at 366.037 kb on - strand, within Atu0372at 366.318 kb on - strand, within Atu0372at 366.320 kb on + strand, within Atu0372at 366.320 kb on + strand, within Atu0372at 366.328 kb on - strand, within Atu0372at 366.328 kb on - strand, within Atu0372at 366.364 kb on - strand, within Atu0372at 366.364 kb on - strand, within Atu0372at 366.446 kb on + strand, within Atu0372at 366.479 kb on + strand, within Atu0372at 366.479 kb on + strand, within Atu0372at 366.486 kb on - strand, within Atu0372at 366.487 kb on - strand, within Atu0372at 366.487 kb on - strand, within Atu0372at 366.490 kb on + strand, within Atu0372at 366.551 kb on + strand, within Atu0372at 366.559 kb on - strand, within Atu0372at 366.559 kb on - strand, within Atu0372at 366.569 kb on - strand, within Atu0372at 366.620 kb on + strand, within Atu0372at 366.628 kb on - strand, within Atu0372at 366.628 kb on - strand, within Atu0372at 366.640 kb on + strand, within Atu0372at 366.748 kb on + strandat 366.891 kb on - strandat 366.940 kb on + strandat 367.042 kb on + strandat 367.087 kb on - strandat 367.109 kb on - strandat 367.113 kb on + strandat 367.113 kb on + strandat 367.113 kb on + strandat 367.118 kb on + strandat 367.121 kb on - strandat 367.165 kb on + strandat 367.198 kb on + strandat 367.206 kb on - strand, within Atu0373at 367.221 kb on - strand, within Atu0373at 367.226 kb on - strand, within Atu0373at 367.226 kb on - strand, within Atu0373at 367.243 kb on - strand, within Atu0373at 367.275 kb on + strand, within Atu0373at 367.279 kb on + strand, within Atu0373at 367.469 kb on - strand, within Atu0373at 367.503 kb on + strand, within Atu0373at 367.503 kb on + strand, within Atu0373at 367.511 kb on - strand, within Atu0373at 367.511 kb on - strand, within Atu0373at 367.526 kb on - strand, within Atu0373at 367.630 kb on - strand, within Atu0373at 367.637 kb on + strand, within Atu0373at 367.724 kb on - strand, within Atu0373at 367.733 kb on - strand, within Atu0373at 367.762 kb on + strand, within Atu0373at 367.819 kb on + strand, within Atu0373at 367.819 kb on + strand, within Atu0373at 367.819 kb on + strand, within Atu0373at 367.819 kb on + strand, within Atu0373at 367.819 kb on + strand, within Atu0373at 367.819 kb on + strand, within Atu0373at 367.827 kb on - strand, within Atu0373at 367.827 kb on - strand, within Atu0373at 367.827 kb on - strand, within Atu0373at 367.827 kb on - strand, within Atu0373at 367.827 kb on - strand, within Atu0373at 368.037 kb on + strand, within Atu0373at 368.451 kb on - strand, within Atu0373at 368.485 kb on - strand, within Atu0373at 368.485 kb on - strand, within Atu0373at 368.492 kb on + strand, within Atu0373at 368.587 kb on + strand, within Atu0373at 368.626 kb on + strand, within Atu0373at 368.635 kb on + strand, within Atu0373at 368.659 kb on + strand, within Atu0373at 368.721 kb on - strand, within Atu0373at 368.885 kb on - strand, within Atu0373at 368.896 kb on - strand, within Atu0373at 368.928 kb on - strand, within Atu0373at 369.037 kb on + strand, within Atu0373at 369.079 kb on + strandat 369.094 kb on + strandat 369.099 kb on + strandat 369.225 kb on + strandat 369.235 kb on + strandat 369.243 kb on - strandat 369.273 kb on + strandat 369.363 kb on + strandat 369.376 kb on - strandat 369.462 kb on + strandat 369.480 kb on - strand, within Atu0374at 369.490 kb on - strand, within Atu0374at 369.554 kb on - strand, within Atu0374at 369.559 kb on - strand, within Atu0374at 369.663 kb on - strand, within Atu0374at 369.853 kb on + strand, within Atu0374at 369.893 kb on + strand, within Atu0374at 369.901 kb on - strand, within Atu0374at 369.901 kb on - strand, within Atu0374at 369.901 kb on - strand, within Atu0374at 369.903 kb on + strand, within Atu0374at 369.914 kb on + strand, within Atu0374at 369.932 kb on + strand, within Atu0374at 369.940 kb on + strand, within Atu0374at 369.942 kb on + strand, within Atu0374at 369.950 kb on - strand, within Atu0374at 369.950 kb on - strand, within Atu0374at 370.050 kb on - strand, within Atu0374at 370.060 kb on - strand, within Atu0374at 370.162 kb on - strand, within Atu0374at 370.235 kb on - strandat 370.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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365,986 + Atu0372 0.11 +1.4
365,996 - Atu0372 0.12 +0.2
366,012 + Atu0372 0.14 +0.1
366,020 - Atu0372 0.15 +0.3
366,020 - Atu0372 0.15 -0.2
366,029 + Atu0372 0.16 -0.2
366,037 - Atu0372 0.16 +0.9
366,318 - Atu0372 0.47 -0.8
366,320 + Atu0372 0.47 -0.1
366,320 + Atu0372 0.47 -1.1
366,328 - Atu0372 0.48 +0.2
366,328 - Atu0372 0.48 +0.1
366,364 - Atu0372 0.52 +0.0
366,364 - Atu0372 0.52 +0.6
366,446 + Atu0372 0.61 +0.6
366,479 + Atu0372 0.64 +0.1
366,479 + Atu0372 0.64 +2.9
366,486 - Atu0372 0.65 +0.9
366,487 - Atu0372 0.65 +1.3
366,487 - Atu0372 0.65 -0.2
366,490 + Atu0372 0.66 -1.8
366,551 + Atu0372 0.72 -0.0
366,559 - Atu0372 0.73 +0.4
366,559 - Atu0372 0.73 +0.1
366,569 - Atu0372 0.74 +1.0
366,620 + Atu0372 0.80 +0.5
366,628 - Atu0372 0.81 +0.7
366,628 - Atu0372 0.81 -0.7
366,640 + Atu0372 0.82 +0.1
366,748 + -2.6
366,891 - -1.8
366,940 + +0.4
367,042 + +2.1
367,087 - -0.1
367,109 - +0.1
367,113 + -1.7
367,113 + +0.8
367,113 + -1.1
367,118 + -1.9
367,121 - -0.5
367,165 + -0.0
367,198 + -0.2
367,206 - Atu0373 0.10 -0.0
367,221 - Atu0373 0.11 +0.1
367,226 - Atu0373 0.11 +0.9
367,226 - Atu0373 0.11 +0.4
367,243 - Atu0373 0.12 +0.1
367,275 + Atu0373 0.13 +0.2
367,279 + Atu0373 0.13 -0.5
367,469 - Atu0373 0.21 +1.9
367,503 + Atu0373 0.23 -2.2
367,503 + Atu0373 0.23 -0.1
367,511 - Atu0373 0.23 -0.4
367,511 - Atu0373 0.23 -0.6
367,526 - Atu0373 0.24 +0.7
367,630 - Atu0373 0.28 +1.5
367,637 + Atu0373 0.29 -0.2
367,724 - Atu0373 0.32 -0.4
367,733 - Atu0373 0.33 -0.4
367,762 + Atu0373 0.34 -0.5
367,819 + Atu0373 0.36 -0.9
367,819 + Atu0373 0.36 -0.1
367,819 + Atu0373 0.36 +2.7
367,819 + Atu0373 0.36 -0.8
367,819 + Atu0373 0.36 +0.3
367,819 + Atu0373 0.36 -0.7
367,827 - Atu0373 0.37 +0.2
367,827 - Atu0373 0.37 -0.7
367,827 - Atu0373 0.37 +0.7
367,827 - Atu0373 0.37 +0.6
367,827 - Atu0373 0.37 -0.9
368,037 + Atu0373 0.46 -0.7
368,451 - Atu0373 0.63 -2.7
368,485 - Atu0373 0.65 -0.1
368,485 - Atu0373 0.65 +1.6
368,492 + Atu0373 0.65 +0.9
368,587 + Atu0373 0.69 +0.1
368,626 + Atu0373 0.71 +0.4
368,635 + Atu0373 0.71 -0.1
368,659 + Atu0373 0.72 +0.6
368,721 - Atu0373 0.75 +0.1
368,885 - Atu0373 0.82 +1.8
368,896 - Atu0373 0.83 -1.1
368,928 - Atu0373 0.84 -0.0
369,037 + Atu0373 0.89 -0.2
369,079 + +0.3
369,094 + +0.3
369,099 + +1.2
369,225 + +1.1
369,235 + +0.3
369,243 - -2.0
369,273 + +0.2
369,363 + +1.0
369,376 - +1.4
369,462 + +0.0
369,480 - Atu0374 0.12 -0.4
369,490 - Atu0374 0.13 -0.5
369,554 - Atu0374 0.19 +0.9
369,559 - Atu0374 0.20 -1.1
369,663 - Atu0374 0.31 -0.2
369,853 + Atu0374 0.51 +0.5
369,893 + Atu0374 0.55 -0.5
369,901 - Atu0374 0.56 -0.2
369,901 - Atu0374 0.56 -1.1
369,901 - Atu0374 0.56 -0.6
369,903 + Atu0374 0.56 +0.9
369,914 + Atu0374 0.58 +0.6
369,932 + Atu0374 0.59 -3.7
369,940 + Atu0374 0.60 +0.1
369,942 + Atu0374 0.61 -0.1
369,950 - Atu0374 0.61 -0.2
369,950 - Atu0374 0.61 +0.8
370,050 - Atu0374 0.72 -0.1
370,060 - Atu0374 0.73 +1.0
370,162 - Atu0374 0.84 -0.1
370,235 - -0.4
370,275 - -0.7

Or see this region's nucleotide sequence