Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0370 and Atu0371 are separated by 14 nucleotides Atu0371 and Atu0372 are separated by 82 nucleotides Atu0372 and Atu0373 are separated by 166 nucleotides
Atu0370: Atu0370 - succinyl-diaminopimelate desuccinylase, at 363,738 to 364,934
Atu0370
Atu0371: Atu0371 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 364,949 to 365,803
Atu0371
Atu0372: Atu0372 - hypothetical protein, at 365,886 to 366,806
Atu0372
Atu0373: Atu0373 - methyl-accepting chemotaxis protein, at 366,973 to 369,300
Atu0373
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 364.942 kb on + strand at 365.907 kb on + strand at 365.915 kb on - strand at 365.930 kb on + strand at 365.986 kb on + strand, within Atu0372 at 365.996 kb on - strand, within Atu0372 at 366.012 kb on + strand, within Atu0372 at 366.020 kb on - strand, within Atu0372 at 366.020 kb on - strand, within Atu0372 at 366.029 kb on + strand, within Atu0372 at 366.037 kb on - strand, within Atu0372 at 366.318 kb on - strand, within Atu0372 at 366.320 kb on + strand, within Atu0372 at 366.320 kb on + strand, within Atu0372 at 366.328 kb on - strand, within Atu0372 at 366.328 kb on - strand, within Atu0372 at 366.364 kb on - strand, within Atu0372 at 366.364 kb on - strand, within Atu0372 at 366.446 kb on + strand, within Atu0372 at 366.479 kb on + strand, within Atu0372 at 366.479 kb on + strand, within Atu0372 at 366.486 kb on - strand, within Atu0372 at 366.487 kb on - strand, within Atu0372 at 366.487 kb on - strand, within Atu0372 at 366.490 kb on + strand, within Atu0372 at 366.551 kb on + strand, within Atu0372 at 366.559 kb on - strand, within Atu0372 at 366.559 kb on - strand, within Atu0372 at 366.569 kb on - strand, within Atu0372 at 366.620 kb on + strand, within Atu0372 at 366.628 kb on - strand, within Atu0372 at 366.628 kb on - strand, within Atu0372 at 366.640 kb on + strand, within Atu0372 at 366.748 kb on + strand at 366.891 kb on - strand at 366.940 kb on + strand at 367.042 kb on + strand at 367.087 kb on - strand at 367.109 kb on - strand at 367.113 kb on + strand at 367.113 kb on + strand at 367.113 kb on + strand at 367.118 kb on + strand at 367.121 kb on - strand at 367.165 kb on + strand at 367.198 kb on + strand at 367.206 kb on - strand, within Atu0373 at 367.221 kb on - strand, within Atu0373 at 367.226 kb on - strand, within Atu0373 at 367.226 kb on - strand, within Atu0373 at 367.243 kb on - strand, within Atu0373 at 367.275 kb on + strand, within Atu0373 at 367.279 kb on + strand, within Atu0373 at 367.469 kb on - strand, within Atu0373 at 367.503 kb on + strand, within Atu0373 at 367.503 kb on + strand, within Atu0373 at 367.511 kb on - strand, within Atu0373 at 367.511 kb on - strand, within Atu0373 at 367.526 kb on - strand, within Atu0373 at 367.630 kb on - strand, within Atu0373 at 367.637 kb on + strand, within Atu0373 at 367.724 kb on - strand, within Atu0373 at 367.733 kb on - strand, within Atu0373 at 367.762 kb on + strand, within Atu0373
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 364,942 + -0.1 365,907 + +0.9 365,915 - +2.1 365,930 + -0.0 365,986 + Atu0372 0.11 +1.4 365,996 - Atu0372 0.12 +0.2 366,012 + Atu0372 0.14 +0.1 366,020 - Atu0372 0.15 +0.3 366,020 - Atu0372 0.15 -0.2 366,029 + Atu0372 0.16 -0.2 366,037 - Atu0372 0.16 +0.9 366,318 - Atu0372 0.47 -0.8 366,320 + Atu0372 0.47 -0.1 366,320 + Atu0372 0.47 -1.1 366,328 - Atu0372 0.48 +0.2 366,328 - Atu0372 0.48 +0.1 366,364 - Atu0372 0.52 +0.0 366,364 - Atu0372 0.52 +0.6 366,446 + Atu0372 0.61 +0.6 366,479 + Atu0372 0.64 +0.1 366,479 + Atu0372 0.64 +2.9 366,486 - Atu0372 0.65 +0.9 366,487 - Atu0372 0.65 +1.3 366,487 - Atu0372 0.65 -0.2 366,490 + Atu0372 0.66 -1.8 366,551 + Atu0372 0.72 -0.0 366,559 - Atu0372 0.73 +0.4 366,559 - Atu0372 0.73 +0.1 366,569 - Atu0372 0.74 +1.0 366,620 + Atu0372 0.80 +0.5 366,628 - Atu0372 0.81 +0.7 366,628 - Atu0372 0.81 -0.7 366,640 + Atu0372 0.82 +0.1 366,748 + -2.6 366,891 - -1.8 366,940 + +0.4 367,042 + +2.1 367,087 - -0.1 367,109 - +0.1 367,113 + -1.7 367,113 + +0.8 367,113 + -1.1 367,118 + -1.9 367,121 - -0.5 367,165 + -0.0 367,198 + -0.2 367,206 - Atu0373 0.10 -0.0 367,221 - Atu0373 0.11 +0.1 367,226 - Atu0373 0.11 +0.9 367,226 - Atu0373 0.11 +0.4 367,243 - Atu0373 0.12 +0.1 367,275 + Atu0373 0.13 +0.2 367,279 + Atu0373 0.13 -0.5 367,469 - Atu0373 0.21 +1.9 367,503 + Atu0373 0.23 -2.2 367,503 + Atu0373 0.23 -0.1 367,511 - Atu0373 0.23 -0.4 367,511 - Atu0373 0.23 -0.6 367,526 - Atu0373 0.24 +0.7 367,630 - Atu0373 0.28 +1.5 367,637 + Atu0373 0.29 -0.2 367,724 - Atu0373 0.32 -0.4 367,733 - Atu0373 0.33 -0.4 367,762 + Atu0373 0.34 -0.5
Or see this region's nucleotide sequence