Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0234 and Atu0235 are separated by 131 nucleotides Atu0235 and Atu0236 are separated by 95 nucleotides Atu0236 and Atu0237 are separated by 71 nucleotides
Atu0234: Atu0234 - conserved hypothetical protein, membrane protein, at 234,325 to 235,200
Atu0234
Atu0235: Atu0235 - transcriptional regulator, GntR family, at 235,332 to 236,705
Atu0235
Atu0236: Atu0236 - hypothetical protein, at 236,801 to 237,118
Atu0236
Atu0237: Atu0237 - hypothetical protein, at 237,190 to 237,648
Atu0237
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 234.366 kb on - strand at 234.374 kb on - strand at 234.390 kb on - strand at 234.426 kb on + strand, within Atu0234 at 234.443 kb on + strand, within Atu0234 at 234.489 kb on - strand, within Atu0234 at 234.669 kb on + strand, within Atu0234 at 234.689 kb on - strand, within Atu0234 at 234.939 kb on + strand, within Atu0234 at 234.957 kb on + strand, within Atu0234 at 235.023 kb on + strand, within Atu0234 at 235.203 kb on - strand at 235.214 kb on - strand at 235.328 kb on + strand at 235.388 kb on + strand at 235.393 kb on + strand at 235.393 kb on + strand at 235.401 kb on - strand at 235.401 kb on - strand at 235.401 kb on - strand at 235.401 kb on - strand at 235.433 kb on + strand at 235.433 kb on + strand at 235.441 kb on - strand at 235.441 kb on - strand at 235.692 kb on + strand, within Atu0235 at 235.783 kb on + strand, within Atu0235 at 235.811 kb on - strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.815 kb on + strand, within Atu0235 at 235.815 kb on + strand, within Atu0235 at 235.821 kb on - strand, within Atu0235 at 235.821 kb on - strand, within Atu0235 at 235.821 kb on - strand, within Atu0235 at 235.823 kb on - strand, within Atu0235 at 235.825 kb on + strand, within Atu0235 at 235.949 kb on + strand, within Atu0235 at 235.980 kb on + strand, within Atu0235 at 235.982 kb on + strand, within Atu0235 at 235.982 kb on + strand, within Atu0235 at 235.982 kb on + strand, within Atu0235 at 235.984 kb on + strand, within Atu0235 at 235.993 kb on - strand, within Atu0235 at 235.993 kb on - strand, within Atu0235 at 236.086 kb on + strand, within Atu0235 at 236.094 kb on - strand, within Atu0235 at 236.142 kb on + strand, within Atu0235 at 236.150 kb on - strand, within Atu0235 at 236.153 kb on + strand, within Atu0235 at 236.232 kb on + strand, within Atu0235 at 236.240 kb on - strand, within Atu0235 at 236.303 kb on - strand, within Atu0235 at 236.376 kb on - strand, within Atu0235 at 236.411 kb on + strand, within Atu0235 at 236.454 kb on - strand, within Atu0235 at 236.479 kb on + strand, within Atu0235 at 236.504 kb on + strand, within Atu0235 at 236.539 kb on + strand, within Atu0235 at 236.586 kb on + strand at 236.596 kb on + strand at 236.680 kb on - strand at 237.035 kb on + strand, within Atu0236 at 237.095 kb on + strand at 237.106 kb on + strand at 237.112 kb on + strand at 237.114 kb on - strand at 237.114 kb on - strand at 237.196 kb on - strand at 237.225 kb on + strand at 237.383 kb on + strand, within Atu0237 at 237.388 kb on + strand, within Atu0237 at 237.419 kb on + strand, within Atu0237 at 237.419 kb on + strand, within Atu0237 at 237.477 kb on - strand, within Atu0237 at 237.499 kb on - strand, within Atu0237
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 234,366 - -0.0 234,374 - -0.4 234,390 - +1.6 234,426 + Atu0234 0.12 -1.5 234,443 + Atu0234 0.13 +0.2 234,489 - Atu0234 0.19 -0.4 234,669 + Atu0234 0.39 -0.2 234,689 - Atu0234 0.42 +2.0 234,939 + Atu0234 0.70 -0.3 234,957 + Atu0234 0.72 +0.1 235,023 + Atu0234 0.80 -0.9 235,203 - +0.9 235,214 - -0.3 235,328 + +1.1 235,388 + +0.1 235,393 + +0.9 235,393 + +0.3 235,401 - -0.4 235,401 - -0.2 235,401 - +0.2 235,401 - -0.1 235,433 + +1.0 235,433 + -0.6 235,441 - -0.0 235,441 - +0.4 235,692 + Atu0235 0.26 +0.7 235,783 + Atu0235 0.33 +0.4 235,811 - Atu0235 0.35 -0.5 235,813 + Atu0235 0.35 +0.2 235,813 + Atu0235 0.35 +0.3 235,813 + Atu0235 0.35 -0.6 235,813 + Atu0235 0.35 -0.4 235,815 + Atu0235 0.35 +0.3 235,815 + Atu0235 0.35 -0.9 235,821 - Atu0235 0.36 -1.0 235,821 - Atu0235 0.36 -0.3 235,821 - Atu0235 0.36 -0.6 235,823 - Atu0235 0.36 +0.0 235,825 + Atu0235 0.36 +0.3 235,949 + Atu0235 0.45 -0.9 235,980 + Atu0235 0.47 -1.7 235,982 + Atu0235 0.47 +0.1 235,982 + Atu0235 0.47 +0.6 235,982 + Atu0235 0.47 -0.0 235,984 + Atu0235 0.47 +1.1 235,993 - Atu0235 0.48 +0.3 235,993 - Atu0235 0.48 -1.1 236,086 + Atu0235 0.55 +0.0 236,094 - Atu0235 0.55 -0.8 236,142 + Atu0235 0.59 -1.3 236,150 - Atu0235 0.60 -1.7 236,153 + Atu0235 0.60 -1.2 236,232 + Atu0235 0.66 -0.3 236,240 - Atu0235 0.66 -0.9 236,303 - Atu0235 0.71 -0.3 236,376 - Atu0235 0.76 -0.7 236,411 + Atu0235 0.79 -0.1 236,454 - Atu0235 0.82 -0.3 236,479 + Atu0235 0.83 -0.5 236,504 + Atu0235 0.85 -0.5 236,539 + Atu0235 0.88 -2.0 236,586 + -0.4 236,596 + -0.5 236,680 - -0.0 237,035 + Atu0236 0.74 +0.1 237,095 + +0.1 237,106 + +0.9 237,112 + +0.2 237,114 - -0.5 237,114 - +0.3 237,196 - +0.4 237,225 + +0.4 237,383 + Atu0237 0.42 -0.3 237,388 + Atu0237 0.43 +0.7 237,419 + Atu0237 0.50 -0.9 237,419 + Atu0237 0.50 +0.3 237,477 - Atu0237 0.63 -1.3 237,499 - Atu0237 0.67 +0.7
Or see this region's nucleotide sequence