Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX49_00150 and MPMX49_00151 are separated by 585 nucleotides MPMX49_00151 and MPMX49_00152 are separated by 32 nucleotides MPMX49_00152 and MPMX49_00153 are separated by 133 nucleotides
MPMX49_00150: MPMX49_00150 - 47 kDa outer membrane protein, at 162,918 to 164,192
_00150
MPMX49_00151: MPMX49_00151 - hypothetical protein, at 164,778 to 166,064
_00151
MPMX49_00152: MPMX49_00152 - hypothetical protein, at 166,097 to 166,633
_00152
MPMX49_00153: MPMX49_00153 - hypothetical protein, at 166,767 to 167,012
_00153
Position (kb) 164
165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 163.807 kb on + strand, within MPMX49_00150 at 163.808 kb on - strand, within MPMX49_00150 at 163.808 kb on - strand, within MPMX49_00150 at 163.866 kb on + strand, within MPMX49_00150 at 163.867 kb on - strand, within MPMX49_00150 at 163.867 kb on - strand, within MPMX49_00150 at 163.904 kb on - strand, within MPMX49_00150 at 163.904 kb on - strand, within MPMX49_00150 at 163.904 kb on - strand, within MPMX49_00150 at 163.943 kb on + strand, within MPMX49_00150 at 164.116 kb on + strand at 164.117 kb on - strand at 164.168 kb on + strand at 164.168 kb on + strand at 164.169 kb on - strand at 164.169 kb on - strand at 164.208 kb on + strand at 164.208 kb on + strand at 164.208 kb on + strand at 164.208 kb on + strand at 164.209 kb on - strand at 164.209 kb on - strand at 164.209 kb on - strand at 164.209 kb on - strand at 164.209 kb on - strand at 164.209 kb on - strand at 164.214 kb on + strand at 164.214 kb on + strand at 164.214 kb on + strand at 164.215 kb on - strand at 164.215 kb on - strand at 164.215 kb on - strand at 164.216 kb on + strand at 164.217 kb on - strand at 164.224 kb on + strand at 164.224 kb on + strand at 164.224 kb on + strand at 164.224 kb on + strand at 164.224 kb on + strand at 164.224 kb on + strand at 164.225 kb on - strand at 164.225 kb on - strand at 164.244 kb on - strand at 164.256 kb on - strand at 164.259 kb on - strand at 164.259 kb on - strand at 164.436 kb on + strand at 164.436 kb on + strand at 164.437 kb on - strand at 164.437 kb on - strand at 164.461 kb on + strand at 164.510 kb on + strand at 164.516 kb on - strand at 164.516 kb on - strand at 164.597 kb on + strand at 164.597 kb on + strand at 164.621 kb on - strand at 164.639 kb on + strand at 164.639 kb on + strand at 164.663 kb on + strand at 164.664 kb on - strand at 164.667 kb on + strand at 164.667 kb on + strand at 164.667 kb on + strand at 164.667 kb on + strand at 164.667 kb on + strand at 164.668 kb on - strand at 164.668 kb on - strand at 164.668 kb on - strand at 164.668 kb on - strand at 164.669 kb on + strand at 164.669 kb on + strand at 164.669 kb on + strand at 164.669 kb on + strand at 164.669 kb on + strand at 164.669 kb on + strand at 164.669 kb on + strand at 164.670 kb on - strand at 164.670 kb on - strand at 164.670 kb on - strand at 164.670 kb on - strand at 164.670 kb on - strand at 164.670 kb on - strand at 164.670 kb on - strand at 164.670 kb on - strand at 164.685 kb on + strand at 164.685 kb on + strand at 164.686 kb on - strand at 164.686 kb on - strand at 164.690 kb on - strand at 164.730 kb on + strand at 164.803 kb on - strand at 164.956 kb on + strand, within MPMX49_00151 at 164.957 kb on - strand, within MPMX49_00151 at 164.969 kb on + strand, within MPMX49_00151 at 164.970 kb on - strand, within MPMX49_00151 at 165.146 kb on - strand, within MPMX49_00151 at 165.170 kb on + strand, within MPMX49_00151 at 165.171 kb on - strand, within MPMX49_00151 at 165.322 kb on + strand, within MPMX49_00151 at 165.323 kb on - strand, within MPMX49_00151 at 165.323 kb on - strand, within MPMX49_00151 at 165.323 kb on - strand, within MPMX49_00151 at 165.506 kb on - strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.538 kb on + strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.539 kb on - strand, within MPMX49_00151 at 165.540 kb on + strand, within MPMX49_00151 at 165.540 kb on + strand, within MPMX49_00151 at 165.541 kb on - strand, within MPMX49_00151 at 165.648 kb on - strand, within MPMX49_00151 at 165.648 kb on - strand, within MPMX49_00151 at 165.726 kb on - strand, within MPMX49_00151 at 165.726 kb on - strand, within MPMX49_00151 at 165.728 kb on + strand, within MPMX49_00151 at 165.728 kb on + strand, within MPMX49_00151 at 165.729 kb on - strand, within MPMX49_00151 at 165.729 kb on - strand, within MPMX49_00151 at 165.828 kb on + strand, within MPMX49_00151 at 165.829 kb on - strand, within MPMX49_00151 at 165.880 kb on + strand, within MPMX49_00151 at 165.940 kb on + strand at 166.020 kb on + strand at 166.020 kb on + strand at 166.020 kb on + strand at 166.020 kb on + strand at 166.020 kb on + strand at 166.020 kb on + strand at 166.020 kb on + strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.021 kb on - strand at 166.062 kb on + strand at 166.062 kb on + strand at 166.147 kb on - strand at 166.215 kb on + strand, within MPMX49_00152 at 166.215 kb on + strand, within MPMX49_00152 at 166.216 kb on - strand, within MPMX49_00152 at 166.216 kb on - strand, within MPMX49_00152 at 166.216 kb on - strand, within MPMX49_00152 at 166.216 kb on - strand, within MPMX49_00152 at 166.216 kb on - strand, within MPMX49_00152 at 166.216 kb on - strand, within MPMX49_00152 at 166.216 kb on - strand, within MPMX49_00152 at 166.219 kb on + strand, within MPMX49_00152 at 166.220 kb on - strand, within MPMX49_00152 at 166.220 kb on - strand, within MPMX49_00152 at 166.220 kb on - strand, within MPMX49_00152 at 166.234 kb on + strand, within MPMX49_00152 at 166.235 kb on - strand, within MPMX49_00152 at 166.419 kb on + strand, within MPMX49_00152 at 166.470 kb on + strand, within MPMX49_00152 at 166.471 kb on - strand, within MPMX49_00152 at 166.471 kb on - strand, within MPMX49_00152 at 166.471 kb on - strand, within MPMX49_00152 at 166.477 kb on + strand, within MPMX49_00152 at 166.477 kb on + strand, within MPMX49_00152 at 166.477 kb on + strand, within MPMX49_00152 at 166.477 kb on + strand, within MPMX49_00152 at 166.477 kb on + strand, within MPMX49_00152 at 166.478 kb on - strand, within MPMX49_00152 at 166.478 kb on - strand, within MPMX49_00152 at 166.478 kb on - strand, within MPMX49_00152 at 166.478 kb on - strand, within MPMX49_00152 at 166.478 kb on - strand, within MPMX49_00152 at 166.620 kb on - strand at 166.720 kb on - strand at 166.720 kb on - strand at 166.733 kb on + strand at 166.733 kb on + strand at 166.733 kb on + strand at 166.734 kb on - strand at 166.790 kb on - strand at 166.794 kb on - strand, within MPMX49_00153 at 166.879 kb on + strand, within MPMX49_00153 at 166.880 kb on - strand, within MPMX49_00153 at 166.880 kb on - strand, within MPMX49_00153 at 166.880 kb on - strand, within MPMX49_00153 at 166.880 kb on - strand, within MPMX49_00153 at 166.880 kb on - strand, within MPMX49_00153 at 166.883 kb on + strand, within MPMX49_00153 at 166.883 kb on + strand, within MPMX49_00153 at 166.974 kb on + strand, within MPMX49_00153 at 166.974 kb on + strand, within MPMX49_00153 at 166.974 kb on + strand, within MPMX49_00153 at 166.974 kb on + strand, within MPMX49_00153 at 166.975 kb on - strand, within MPMX49_00153 at 166.994 kb on + strand at 166.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 163,807 + MPMX49_00150 0.70 -0.1 163,808 - MPMX49_00150 0.70 -1.7 163,808 - MPMX49_00150 0.70 +0.9 163,866 + MPMX49_00150 0.74 -1.2 163,867 - MPMX49_00150 0.74 +2.0 163,867 - MPMX49_00150 0.74 +0.5 163,904 - MPMX49_00150 0.77 -0.4 163,904 - MPMX49_00150 0.77 -1.0 163,904 - MPMX49_00150 0.77 -0.1 163,943 + MPMX49_00150 0.80 -0.8 164,116 + +1.0 164,117 - +0.3 164,168 + -0.7 164,168 + -1.5 164,169 - +0.1 164,169 - -0.2 164,208 + -0.1 164,208 + +1.0 164,208 + -1.4 164,208 + -0.0 164,209 - -1.4 164,209 - -1.0 164,209 - -0.6 164,209 - -0.6 164,209 - +0.0 164,209 - -1.2 164,214 + +0.2 164,214 + -0.7 164,214 + +0.8 164,215 - -0.4 164,215 - -0.2 164,215 - +0.1 164,216 + +0.4 164,217 - +0.2 164,224 + -0.6 164,224 + +1.2 164,224 + -0.8 164,224 + -0.0 164,224 + -0.7 164,224 + -0.8 164,225 - -0.8 164,225 - +1.4 164,244 - -1.3 164,256 - -0.3 164,259 - +1.1 164,259 - -0.9 164,436 + +1.6 164,436 + -0.8 164,437 - +0.6 164,437 - +0.8 164,461 + -0.6 164,510 + +0.1 164,516 - +0.7 164,516 - -3.0 164,597 + -0.2 164,597 + -0.2 164,621 - -0.8 164,639 + +1.0 164,639 + -1.0 164,663 + +0.2 164,664 - -0.5 164,667 + -0.0 164,667 + -0.1 164,667 + -0.0 164,667 + -0.1 164,667 + -0.6 164,668 - +1.0 164,668 - +1.0 164,668 - +0.4 164,668 - -0.5 164,669 + -0.4 164,669 + +4.0 164,669 + -0.3 164,669 + +0.2 164,669 + +0.5 164,669 + +0.7 164,669 + +1.3 164,670 - -0.1 164,670 - +0.1 164,670 - +0.3 164,670 - -0.1 164,670 - -2.6 164,670 - +0.4 164,670 - -0.5 164,670 - -1.1 164,685 + -0.7 164,685 + -1.2 164,686 - -1.2 164,686 - -0.0 164,690 - +0.2 164,730 + +0.7 164,803 - -0.1 164,956 + MPMX49_00151 0.14 -0.0 164,957 - MPMX49_00151 0.14 +1.0 164,969 + MPMX49_00151 0.15 +0.7 164,970 - MPMX49_00151 0.15 +0.5 165,146 - MPMX49_00151 0.29 -0.6 165,170 + MPMX49_00151 0.30 +0.6 165,171 - MPMX49_00151 0.31 +1.1 165,322 + MPMX49_00151 0.42 -0.8 165,323 - MPMX49_00151 0.42 +0.0 165,323 - MPMX49_00151 0.42 -0.7 165,323 - MPMX49_00151 0.42 +0.0 165,506 - MPMX49_00151 0.57 +2.0 165,538 + MPMX49_00151 0.59 +1.1 165,538 + MPMX49_00151 0.59 +0.3 165,538 + MPMX49_00151 0.59 +0.1 165,538 + MPMX49_00151 0.59 -0.3 165,538 + MPMX49_00151 0.59 -0.0 165,538 + MPMX49_00151 0.59 +0.6 165,538 + MPMX49_00151 0.59 -2.0 165,538 + MPMX49_00151 0.59 +0.1 165,539 - MPMX49_00151 0.59 -2.5 165,539 - MPMX49_00151 0.59 -0.8 165,539 - MPMX49_00151 0.59 -0.5 165,539 - MPMX49_00151 0.59 +0.5 165,539 - MPMX49_00151 0.59 -2.5 165,539 - MPMX49_00151 0.59 +0.2 165,539 - MPMX49_00151 0.59 +0.9 165,539 - MPMX49_00151 0.59 -2.6 165,539 - MPMX49_00151 0.59 -0.6 165,539 - MPMX49_00151 0.59 +0.0 165,539 - MPMX49_00151 0.59 -0.9 165,539 - MPMX49_00151 0.59 +0.4 165,539 - MPMX49_00151 0.59 -0.2 165,539 - MPMX49_00151 0.59 -0.0 165,539 - MPMX49_00151 0.59 +0.5 165,539 - MPMX49_00151 0.59 +0.6 165,539 - MPMX49_00151 0.59 +0.8 165,539 - MPMX49_00151 0.59 -1.2 165,539 - MPMX49_00151 0.59 +0.5 165,540 + MPMX49_00151 0.59 -0.5 165,540 + MPMX49_00151 0.59 +0.3 165,541 - MPMX49_00151 0.59 -0.1 165,648 - MPMX49_00151 0.68 -0.1 165,648 - MPMX49_00151 0.68 -0.4 165,726 - MPMX49_00151 0.74 +0.7 165,726 - MPMX49_00151 0.74 -1.7 165,728 + MPMX49_00151 0.74 -0.8 165,728 + MPMX49_00151 0.74 -0.0 165,729 - MPMX49_00151 0.74 +1.4 165,729 - MPMX49_00151 0.74 +2.4 165,828 + MPMX49_00151 0.82 -1.0 165,829 - MPMX49_00151 0.82 +0.7 165,880 + MPMX49_00151 0.86 -0.1 165,940 + -0.1 166,020 + -1.5 166,020 + +0.1 166,020 + -1.2 166,020 + -0.3 166,020 + +0.8 166,020 + +0.6 166,020 + -0.3 166,021 - +0.1 166,021 - -2.5 166,021 - -0.5 166,021 - +1.4 166,021 - -1.0 166,021 - -0.7 166,021 - -1.0 166,021 - +1.6 166,021 - -0.9 166,062 + -0.7 166,062 + -1.3 166,147 - -0.6 166,215 + MPMX49_00152 0.22 -0.2 166,215 + MPMX49_00152 0.22 +0.2 166,216 - MPMX49_00152 0.22 +1.0 166,216 - MPMX49_00152 0.22 -0.3 166,216 - MPMX49_00152 0.22 +0.8 166,216 - MPMX49_00152 0.22 -0.5 166,216 - MPMX49_00152 0.22 -1.2 166,216 - MPMX49_00152 0.22 -0.0 166,216 - MPMX49_00152 0.22 +0.2 166,219 + MPMX49_00152 0.23 -1.3 166,220 - MPMX49_00152 0.23 +0.0 166,220 - MPMX49_00152 0.23 -0.8 166,220 - MPMX49_00152 0.23 -0.2 166,234 + MPMX49_00152 0.26 +0.8 166,235 - MPMX49_00152 0.26 +1.6 166,419 + MPMX49_00152 0.60 -0.5 166,470 + MPMX49_00152 0.69 +0.4 166,471 - MPMX49_00152 0.70 -0.5 166,471 - MPMX49_00152 0.70 -0.6 166,471 - MPMX49_00152 0.70 +0.4 166,477 + MPMX49_00152 0.71 -0.3 166,477 + MPMX49_00152 0.71 +0.5 166,477 + MPMX49_00152 0.71 -0.6 166,477 + MPMX49_00152 0.71 +0.4 166,477 + MPMX49_00152 0.71 -0.8 166,478 - MPMX49_00152 0.71 -1.4 166,478 - MPMX49_00152 0.71 +0.3 166,478 - MPMX49_00152 0.71 -1.3 166,478 - MPMX49_00152 0.71 +0.1 166,478 - MPMX49_00152 0.71 +0.1 166,620 - -0.2 166,720 - -0.9 166,720 - -0.3 166,733 + -0.5 166,733 + -0.0 166,733 + -0.1 166,734 - -0.3 166,790 - +0.5 166,794 - MPMX49_00153 0.11 +1.2 166,879 + MPMX49_00153 0.46 +1.6 166,880 - MPMX49_00153 0.46 +0.6 166,880 - MPMX49_00153 0.46 -0.5 166,880 - MPMX49_00153 0.46 -0.5 166,880 - MPMX49_00153 0.46 -0.2 166,880 - MPMX49_00153 0.46 -0.8 166,883 + MPMX49_00153 0.47 -1.1 166,883 + MPMX49_00153 0.47 +0.6 166,974 + MPMX49_00153 0.84 -0.9 166,974 + MPMX49_00153 0.84 -1.0 166,974 + MPMX49_00153 0.84 -0.2 166,974 + MPMX49_00153 0.84 -0.6 166,975 - MPMX49_00153 0.85 -0.6 166,994 + +0.4 166,994 + +1.0
Or see this region's nucleotide sequence