Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23780 and LU632_RS23785 are separated by 188 nucleotides LU632_RS23785 and LU632_RS23790 are separated by 75 nucleotides LU632_RS23790 and LU632_RS23795 overlap by 4 nucleotides
LU632_RS23780: LU632_RS23780 - IS481 family transposase, at 4,537,632 to 4,538,672
_RS23780
LU632_RS23785: LU632_RS23785 - hypothetical protein, at 4,538,861 to 4,539,058
_RS23785
LU632_RS23790: LU632_RS23790 - DUF2612 domain-containing protein, at 4,539,134 to 4,539,787
_RS23790
LU632_RS23795: LU632_RS23795 - baseplate J/gp47 family protein, at 4,539,784 to 4,540,974
_RS23795
Position (kb) 4538
4539
4540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4538.724 kb on + strand at 4538.816 kb on + strand at 4538.816 kb on + strand at 4538.817 kb on - strand at 4538.817 kb on - strand at 4538.817 kb on - strand at 4538.819 kb on - strand at 4538.819 kb on - strand at 4538.873 kb on - strand at 4538.918 kb on - strand, within LU632_RS23785 at 4538.993 kb on - strand, within LU632_RS23785 at 4539.036 kb on + strand, within LU632_RS23785 at 4539.059 kb on - strand at 4539.059 kb on - strand at 4539.059 kb on - strand at 4539.122 kb on + strand at 4539.123 kb on - strand at 4539.187 kb on + strand at 4539.232 kb on - strand, within LU632_RS23790 at 4539.232 kb on - strand, within LU632_RS23790 at 4539.232 kb on - strand, within LU632_RS23790 at 4539.235 kb on + strand, within LU632_RS23790 at 4539.235 kb on + strand, within LU632_RS23790 at 4539.236 kb on - strand, within LU632_RS23790 at 4539.236 kb on - strand, within LU632_RS23790 at 4539.236 kb on - strand, within LU632_RS23790 at 4539.263 kb on - strand, within LU632_RS23790 at 4539.280 kb on + strand, within LU632_RS23790 at 4539.294 kb on - strand, within LU632_RS23790 at 4539.294 kb on - strand, within LU632_RS23790 at 4539.296 kb on + strand, within LU632_RS23790 at 4539.324 kb on + strand, within LU632_RS23790 at 4539.397 kb on - strand, within LU632_RS23790 at 4539.400 kb on + strand, within LU632_RS23790 at 4539.472 kb on + strand, within LU632_RS23790 at 4539.473 kb on - strand, within LU632_RS23790 at 4539.594 kb on + strand, within LU632_RS23790 at 4539.776 kb on - strand at 4539.777 kb on + strand at 4539.778 kb on - strand at 4539.819 kb on + strand at 4539.825 kb on + strand at 4539.825 kb on + strand at 4539.951 kb on - strand, within LU632_RS23795 at 4539.951 kb on - strand, within LU632_RS23795 at 4539.994 kb on - strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 4,538,724 + -0.8 4,538,816 + +0.9 4,538,816 + +1.2 4,538,817 - +0.3 4,538,817 - +1.2 4,538,817 - +0.2 4,538,819 - +0.9 4,538,819 - +0.4 4,538,873 - -0.9 4,538,918 - LU632_RS23785 0.29 -1.7 4,538,993 - LU632_RS23785 0.67 -0.7 4,539,036 + LU632_RS23785 0.88 -1.7 4,539,059 - +0.5 4,539,059 - -0.2 4,539,059 - -0.3 4,539,122 + -0.1 4,539,123 - +1.2 4,539,187 + +0.1 4,539,232 - LU632_RS23790 0.15 -0.1 4,539,232 - LU632_RS23790 0.15 -0.9 4,539,232 - LU632_RS23790 0.15 -0.6 4,539,235 + LU632_RS23790 0.15 -0.3 4,539,235 + LU632_RS23790 0.15 -2.1 4,539,236 - LU632_RS23790 0.16 +0.2 4,539,236 - LU632_RS23790 0.16 +0.9 4,539,236 - LU632_RS23790 0.16 -0.3 4,539,263 - LU632_RS23790 0.20 -0.2 4,539,280 + LU632_RS23790 0.22 +0.1 4,539,294 - LU632_RS23790 0.24 -0.1 4,539,294 - LU632_RS23790 0.24 +0.2 4,539,296 + LU632_RS23790 0.25 -1.9 4,539,324 + LU632_RS23790 0.29 +0.6 4,539,397 - LU632_RS23790 0.40 -0.1 4,539,400 + LU632_RS23790 0.41 +0.4 4,539,472 + LU632_RS23790 0.52 -0.2 4,539,473 - LU632_RS23790 0.52 -1.7 4,539,594 + LU632_RS23790 0.70 -0.1 4,539,776 - -0.1 4,539,777 + -0.1 4,539,778 - +0.4 4,539,819 + -0.0 4,539,825 + +0.4 4,539,825 + +0.5 4,539,951 - LU632_RS23795 0.14 +0.3 4,539,951 - LU632_RS23795 0.14 +0.2 4,539,994 - LU632_RS23795 0.18 +0.4 4,540,041 + LU632_RS23795 0.22 +0.1 4,540,041 + LU632_RS23795 0.22 +1.8 4,540,041 + LU632_RS23795 0.22 -0.7 4,540,041 + LU632_RS23795 0.22 -1.1 4,540,042 - LU632_RS23795 0.22 +0.0 4,540,042 - LU632_RS23795 0.22 +0.3 4,540,042 - LU632_RS23795 0.22 -1.1 4,540,042 - LU632_RS23795 0.22 +0.3
Or see this region's nucleotide sequence