Experiment: survival 4C, 24 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnL and glnA are separated by 186 nucleotides glnA and typA are separated by 441 nucleotides
LU632_RS22140: glnL - nitrogen regulation protein NR(II), at 4,228,876 to 4,229,925
glnL
LU632_RS22145: glnA - glutamate--ammonia ligase, at 4,230,112 to 4,231,521
glnA
LU632_RS22150: typA - ribosome-dependent GTPase TypA, at 4,231,963 to 4,233,786
typA
Position (kb) 4230
4231
4232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4229.145 kb on + strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.145 kb on + strand, within glnL at 4229.332 kb on - strand, within glnL at 4229.427 kb on - strand, within glnL at 4229.427 kb on - strand, within glnL at 4229.553 kb on + strand, within glnL at 4229.553 kb on + strand, within glnL at 4229.554 kb on - strand, within glnL at 4229.554 kb on - strand, within glnL at 4229.618 kb on - strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.652 kb on + strand, within glnL at 4229.653 kb on - strand, within glnL at 4229.653 kb on - strand, within glnL at 4229.739 kb on + strand, within glnL at 4229.739 kb on + strand, within glnL at 4229.740 kb on - strand, within glnL at 4229.867 kb on - strand at 4229.868 kb on + strand at 4229.868 kb on + strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.869 kb on - strand at 4229.925 kb on + strand at 4230.062 kb on + strand at 4230.062 kb on + strand at 4230.063 kb on - strand at 4231.540 kb on - strand at 4231.639 kb on - strand at 4231.639 kb on - strand at 4231.787 kb on + strand at 4231.787 kb on + strand at 4231.787 kb on + strand at 4231.794 kb on - strand at 4231.837 kb on + strand at 4231.889 kb on - strand at 4231.925 kb on + strand at 4231.926 kb on - strand at 4231.930 kb on + strand at 4232.452 kb on + strand, within typA at 4232.452 kb on + strand, within typA
Per-strain Table
Position Strand Gene LocusTag Fraction survival 4C, 24 hrs remove 4,229,145 + glnL LU632_RS22140 0.26 +0.8 4,229,145 + glnL LU632_RS22140 0.26 +0.7 4,229,145 + glnL LU632_RS22140 0.26 +1.4 4,229,332 - glnL LU632_RS22140 0.43 +1.5 4,229,427 - glnL LU632_RS22140 0.52 +1.7 4,229,427 - glnL LU632_RS22140 0.52 -0.5 4,229,553 + glnL LU632_RS22140 0.64 +1.1 4,229,553 + glnL LU632_RS22140 0.64 +1.3 4,229,554 - glnL LU632_RS22140 0.65 +1.2 4,229,554 - glnL LU632_RS22140 0.65 +0.8 4,229,618 - glnL LU632_RS22140 0.71 +0.7 4,229,652 + glnL LU632_RS22140 0.74 +0.4 4,229,652 + glnL LU632_RS22140 0.74 +0.8 4,229,652 + glnL LU632_RS22140 0.74 +1.8 4,229,652 + glnL LU632_RS22140 0.74 +1.1 4,229,652 + glnL LU632_RS22140 0.74 +0.3 4,229,653 - glnL LU632_RS22140 0.74 +0.7 4,229,653 - glnL LU632_RS22140 0.74 +0.4 4,229,739 + glnL LU632_RS22140 0.82 +0.4 4,229,739 + glnL LU632_RS22140 0.82 +0.3 4,229,740 - glnL LU632_RS22140 0.82 +0.8 4,229,867 - +1.8 4,229,868 + +1.2 4,229,868 + +0.8 4,229,869 - +1.0 4,229,869 - +0.7 4,229,869 - +0.7 4,229,869 - +0.7 4,229,869 - -0.2 4,229,869 - +1.0 4,229,869 - +0.6 4,229,925 + +0.3 4,230,062 + +0.1 4,230,062 + -0.2 4,230,063 - -0.2 4,231,540 - +1.5 4,231,639 - +0.3 4,231,639 - +0.2 4,231,787 + +1.1 4,231,787 + +1.0 4,231,787 + +0.4 4,231,794 - +0.6 4,231,837 + +1.3 4,231,889 - +0.6 4,231,925 + -1.2 4,231,926 - +1.1 4,231,930 + +0.6 4,232,452 + typA LU632_RS22150 0.27 -2.2 4,232,452 + typA LU632_RS22150 0.27 -0.2
Or see this region's nucleotide sequence