Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21095

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglmM and folP are separated by 4 nucleotidesfolP and LU632_RS21100 are separated by 298 nucleotides LU632_RS21090: glmM - phosphoglucosamine mutase, at 4,030,989 to 4,032,323 glmM LU632_RS21095: folP - dihydropteroate synthase, at 4,032,328 to 4,033,164 folP LU632_RS21100: LU632_RS21100 - IS110 family transposase, at 4,033,463 to 4,034,458 _RS21100 Position (kb) 4032 4033 4034Strain fitness (log2 ratio) -1 0 1 2at 4033.254 kb on + strandat 4033.254 kb on + strandat 4033.369 kb on + strandat 4033.398 kb on + strandat 4033.399 kb on - strandat 4033.399 kb on - strandat 4033.431 kb on + strandat 4033.465 kb on - strandat 4033.465 kb on - strandat 4033.465 kb on - strandat 4033.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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4,033,254 + +0.7
4,033,254 + +0.3
4,033,369 + -0.4
4,033,398 + +1.8
4,033,399 - -1.0
4,033,399 - +0.2
4,033,431 + +0.1
4,033,465 - +0.6
4,033,465 - -0.2
4,033,465 - +0.0
4,033,506 - -0.2

Or see this region's nucleotide sequence