Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17750

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17745 and guaA are separated by 60 nucleotidesguaA and guaB are separated by 78 nucleotides LU632_RS17745: LU632_RS17745 - IS481 family transposase, at 3,337,008 to 3,338,040 _RS17745 LU632_RS17750: guaA - glutamine-hydrolyzing GMP synthase, at 3,338,101 to 3,339,681 guaA LU632_RS17755: guaB - IMP dehydrogenase, at 3,339,760 to 3,341,226 guaB Position (kb) 3338 3339 3340Strain fitness (log2 ratio) -2 -1 0 1 2at 3337.125 kb on + strand, within LU632_RS17745at 3337.125 kb on + strand, within LU632_RS17745at 3337.125 kb on + strand, within LU632_RS17745at 3337.194 kb on - strand, within LU632_RS17745at 3337.243 kb on - strand, within LU632_RS17745at 3337.572 kb on + strand, within LU632_RS17745at 3339.880 kb on - strandat 3339.978 kb on + strand, within guaBat 3340.080 kb on + strand, within guaB

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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3,337,125 + LU632_RS17745 0.11 +1.0
3,337,125 + LU632_RS17745 0.11 +1.5
3,337,125 + LU632_RS17745 0.11 +1.9
3,337,194 - LU632_RS17745 0.18 -0.3
3,337,243 - LU632_RS17745 0.23 +0.5
3,337,572 + LU632_RS17745 0.55 +1.7
3,339,880 - -2.6
3,339,978 + guaB LU632_RS17755 0.15 -1.3
3,340,080 + guaB LU632_RS17755 0.22 -0.3

Or see this region's nucleotide sequence