Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14805

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyceG and pabC are separated by 11 nucleotidespabC and fabF are separated by 236 nucleotides LU632_RS14800: yceG - cell division protein YceG, at 2,813,008 to 2,814,027 yceG LU632_RS14805: pabC - aminodeoxychorismate lyase, at 2,814,039 to 2,814,833 pabC LU632_RS14810: fabF - beta-ketoacyl-ACP synthase II, at 2,815,070 to 2,816,311 fabF Position (kb) 2814 2815Strain fitness (log2 ratio) -2 -1 0 1 2at 2813.118 kb on - strand, within yceGat 2813.427 kb on - strand, within yceGat 2813.497 kb on - strand, within yceGat 2813.535 kb on - strand, within yceGat 2813.535 kb on - strand, within yceGat 2813.535 kb on - strand, within yceGat 2813.608 kb on - strand, within yceGat 2813.630 kb on - strand, within yceGat 2813.752 kb on - strand, within yceGat 2814.163 kb on - strand, within pabCat 2814.214 kb on - strand, within pabCat 2814.214 kb on - strand, within pabCat 2814.214 kb on - strand, within pabCat 2814.214 kb on - strand, within pabCat 2814.214 kb on - strand, within pabCat 2814.219 kb on - strand, within pabCat 2814.247 kb on - strand, within pabCat 2814.301 kb on - strand, within pabCat 2814.301 kb on - strand, within pabCat 2814.330 kb on - strand, within pabCat 2814.529 kb on - strand, within pabCat 2814.633 kb on - strand, within pabCat 2814.781 kb on - strandat 2814.944 kb on + strandat 2814.944 kb on + strandat 2814.945 kb on - strandat 2814.945 kb on - strandat 2814.945 kb on - strandat 2815.134 kb on + strandat 2815.135 kb on - strandat 2815.238 kb on + strand, within fabFat 2815.239 kb on - strand, within fabFat 2815.300 kb on + strand, within fabFat 2815.301 kb on - strand, within fabFat 2815.397 kb on - strand, within fabFat 2815.505 kb on - strand, within fabFat 2815.509 kb on + strand, within fabFat 2815.676 kb on - strand, within fabFat 2815.681 kb on + strand, within fabFat 2815.726 kb on + strand, within fabFat 2815.727 kb on - strand, within fabFat 2815.727 kb on - strand, within fabFat 2815.730 kb on - strand, within fabFat 2815.804 kb on + strand, within fabF

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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2,813,118 - yceG LU632_RS14800 0.11 +1.1
2,813,427 - yceG LU632_RS14800 0.41 +0.9
2,813,497 - yceG LU632_RS14800 0.48 +0.4
2,813,535 - yceG LU632_RS14800 0.52 +1.6
2,813,535 - yceG LU632_RS14800 0.52 +0.2
2,813,535 - yceG LU632_RS14800 0.52 -0.3
2,813,608 - yceG LU632_RS14800 0.59 -0.0
2,813,630 - yceG LU632_RS14800 0.61 +0.4
2,813,752 - yceG LU632_RS14800 0.73 +1.0
2,814,163 - pabC LU632_RS14805 0.16 +0.4
2,814,214 - pabC LU632_RS14805 0.22 -0.3
2,814,214 - pabC LU632_RS14805 0.22 +2.5
2,814,214 - pabC LU632_RS14805 0.22 -0.2
2,814,214 - pabC LU632_RS14805 0.22 +0.2
2,814,214 - pabC LU632_RS14805 0.22 +0.5
2,814,219 - pabC LU632_RS14805 0.23 +2.0
2,814,247 - pabC LU632_RS14805 0.26 -1.3
2,814,301 - pabC LU632_RS14805 0.33 +0.9
2,814,301 - pabC LU632_RS14805 0.33 +0.7
2,814,330 - pabC LU632_RS14805 0.37 -0.3
2,814,529 - pabC LU632_RS14805 0.62 +0.9
2,814,633 - pabC LU632_RS14805 0.75 +0.9
2,814,781 - -2.6
2,814,944 + -0.3
2,814,944 + +0.9
2,814,945 - -0.3
2,814,945 - +0.0
2,814,945 - +0.0
2,815,134 + -0.9
2,815,135 - -0.6
2,815,238 + fabF LU632_RS14810 0.14 -1.3
2,815,239 - fabF LU632_RS14810 0.14 -1.3
2,815,300 + fabF LU632_RS14810 0.19 -0.3
2,815,301 - fabF LU632_RS14810 0.19 -0.1
2,815,397 - fabF LU632_RS14810 0.26 -1.2
2,815,505 - fabF LU632_RS14810 0.35 +2.7
2,815,509 + fabF LU632_RS14810 0.35 +0.8
2,815,676 - fabF LU632_RS14810 0.49 +0.0
2,815,681 + fabF LU632_RS14810 0.49 +0.8
2,815,726 + fabF LU632_RS14810 0.53 -0.3
2,815,727 - fabF LU632_RS14810 0.53 -0.3
2,815,727 - fabF LU632_RS14810 0.53 +0.0
2,815,730 - fabF LU632_RS14810 0.53 +0.7
2,815,804 + fabF LU632_RS14810 0.59 -0.0

Or see this region's nucleotide sequence