Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13430

Experiment: survival 4C, 24 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntruvC and LU632_RS13425 are separated by 31 nucleotidesLU632_RS13425 and nudB are separated by 146 nucleotidesnudB and aspS overlap by 1 nucleotides LU632_RS13420: ruvC - crossover junction endodeoxyribonuclease RuvC, at 2,560,899 to 2,561,423 ruvC LU632_RS13425: LU632_RS13425 - YebC/PmpR family DNA-binding transcriptional regulator, at 2,561,455 to 2,562,198 _RS13425 LU632_RS13430: nudB - dihydroneopterin triphosphate diphosphatase, at 2,562,345 to 2,562,779 nudB LU632_RS13435: aspS - aspartate--tRNA ligase, at 2,562,779 to 2,564,578 aspS Position (kb) 2562 2563Strain fitness (log2 ratio) -1 0 1 2at 2561.457 kb on - strandat 2561.703 kb on - strand, within LU632_RS13425at 2561.805 kb on - strand, within LU632_RS13425at 2561.940 kb on - strand, within LU632_RS13425at 2562.064 kb on - strand, within LU632_RS13425at 2562.184 kb on - strandat 2562.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction survival 4C, 24 hrs
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2,561,457 - +2.3
2,561,703 - LU632_RS13425 0.33 -0.6
2,561,805 - LU632_RS13425 0.47 -0.2
2,561,940 - LU632_RS13425 0.65 -0.9
2,562,064 - LU632_RS13425 0.82 -0.6
2,562,184 - -1.3
2,562,237 - +0.4

Or see this region's nucleotide sequence